Input parameters:

  Query = 2 (Len=237)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (2, Len=237):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASFPPRVNEKEIGKLLLNLVDHTEVVRDLTFAPDGSLILVSASRDKTLRVWDLKDDGNMMKVLRGHQNWVYSCAFSPDS 80  
WD40-rpts                   (_________________WD 1_________________)    (_________________WD 2_

Query       81 SMLCSVGASKAVFLWNMDKYTMIRKLEGHHHDVVACDFSPDGALLATASYDTRVYIWDPHNGDILMEFGMVRFWRIDEDY 160 
WD40-rpts      _______________)   (_________________WD 3________________)                  (___

Query      161 PVQVAPLSNGLCCAFSTDGSVLAAGTHDGSVYFWATPRQVPSLQHLCRMSIRRVMPTQEVQELPIPSKLLEFLSYRI 237 
WD40-rpts      ______________WD 4________________)  (_________________WD 5________________) 

5 WD40-repeats found in QUERY=2 (Len=237):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    14-53       9.57  510.08  8.3e-06       47.5%     56.37
  WD 2:  Seg  6    58-96       9.87  522.30  5.7e-06       32.5%     56.89
  WD 3:  Seg 10   100-138     10.27  538.97  3.4e-06       37.5%     55.53
  WD 4:  Seg 16   157-195      8.54  467.38  3.1e-05       27.5%     48.27
  WD 5:  Seg 19   198-236      5.71  350.67  0.00117        7.5%     40.90

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   14-53     GKLLLNLVDHTEVVRDLTFAPDGSLILVSASRDKTLRVWD
   WD 2   58-96     GNMMKVLRGHQNWVYSCAFSPDSSM-LCSVGASKAVFLWN
   WD 3  100-138    YTMIRKLEGHHHDVVACDFSPDGAL-LATASYDTRVYIWD
   WD 4  157-195    DEDYPVQVAPLSNGLCCAFSTDGSV-LAAGTHDGSVYFWA
   WD 5  198-236    RQVPSLQHLCRMSIRRVMPTQEVQE-LPIPSKLLEFLSYR

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKR-LVSGSEDGTIKVWD