Input parameters:

  Query = sp_Q7SG97_HSV2_NEUCR (Len=429)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (sp_Q7SG97_HSV2_NEUCR, Len=429):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDTRRILEHPVLAPVLSVTFNHDNSCFAVGLDHGFRIYESGSCVLRTSRDFGAGIGMVQMLGRTNILGLVGGGRQTKLSR 80  
WD40-rpts      (_________________WD 1________________)(_____________________WD 2_______________

Query       81 NKLVLWDDKSKKQVGVISASSLVRGAKMSSKRIVLVLMDRVQVYQTAKPHPLLSTYETTDNPLGLCCLSSDRIAFPGRAI 160 
WD40-rpts      ______)                                         (_________________WD 3__________

Query      161 GHVQLVEVETGNVSIITAHTSALRAMALSQDGELLATASEMGTIIRVYATSNCARLYELRRGIDKAIIFSIGFSPSGKYL 240 
WD40-rpts      ______)  (_________________WD 4_________________)   (__________________WD 5_____

Query      241 ACTSDKSTLHVFDVTRPGGTRPITSNGGTAYAAGEPSVTGNNRPSSPYSVASSSGGGGGVMVNSNNGGSDMAADDGQGRW 320 
WD40-rpts      ____________)   (_________________WD 6________________)                         

Query      321 GFLSKLPLMPRIFSDPYSFASAKFEMADEPVSNGSREPLTRDGGLAIIGGPLKGNLGWISETEMVVIGAGRDPKWEKFAI 400 
WD40-rpts                                                                   (_________________W

Query      401 QEGGQQDGYQGGGRRLVRVGWKRYGGETP 429 
WD40-rpts      D 7________________)         

7 WD40-repeats found in QUERY=sp_Q7SG97_HSV2_NEUCR (Len=429):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-39       6.16  369.11  0.00066       17.5%     46.55
  WD 2:  Seg  4    40-87       5.52  342.83  0.00149       17.5%     27.89
  WD 3:  Seg 12   129-167      5.43  338.77  0.00169       12.5%     45.84
  WD 4:  Seg 16   170-209      7.98  444.20  6.4e-05       32.5%     56.87
  WD 5:  Seg 20   213-253      7.81  437.41  7.9e-05       32.5%     55.23
  WD 6:  Seg 24   257-295      5.72  350.82  0.00116        5.0%     11.19
  WD 7:  Seg 31   382-420      4.33  293.70  0.00684        7.5%     37.46

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-39     MDTRR----ILEHPVL--APVLSVTFNHDNSCFAVG----L-DHG-FRIYE
   WD 2   40-87     SGSCVLRTSRDFGAGI--GMVQMLGRTNILGLVGGGRQTKLSRNK-LVLWD
   WD 3  129-167    PHPLL----STY-ETT--DNPLGLCCLSSDRIAFPG----RAIGH-VQLVE
   WD 4  170-209    -TGNV----SIITAHT--SALRAMALSQDGELLATA----SEMGTIIRVYA
   WD 5  213-253    -CARL----YELRRGIDKAIIFSIGFSPSGKYLACT----SDKST-LHVFD
   WD 6  257-295    -PGGT----RPITSNG--GTAYAAGEPSVTGNNRPS----SPYSV-ASSSG
   WD 7  382-420    -TEMV----VIGAGRD--PKWEKFAIQEGGQQDGYQ----GGGRR-LVRVG

   WD40 Template    TGECL----RTLSGHT--SGVTSVSFSPDGKRLVSG----SEDGT-IKVWD