Input parameters:

  Query = CsaV3_4G024950 (Len=946)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_4G024950, Len=946):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MERKKTMNWDGLRDDDDDDRFFESIERMSCAMPEDLASSSDDEDFEDSRMSFASVVSSAKHDEFRTFAMTSPMTPEYDIW 80  
WD40-rpts                                                                                      

Query       81 MAAPGSIKERRKRLLQGMGLNSGKQFQRLQSREFQRGVSRKLVNNTQISQPETVGSPEVVDQKQDAPAQTPLPIMLVRSR 160 
WD40-rpts                                                        (_________________WD 1________

Query      161 SDGDIDTFSISRTRKDDLLGNVSKQRLTRTYSMIMASSARMCNYPESIRVSPNDCSQQIGNGSTLSTVFSNNRLGAFFLI 240 
WD40-rpts      ________)                                                      (________________

Query      241 KNLDTGKEFIVNGYDQDGMWNRLSDIQTGKQLTMEEFEKCVGYSPVVTELMRRENVSRINGFFGDRKLNVNSYLSKSLRM 320 
WD40-rpts      __WD 2__________________)        (_________________WD 3________________)        

Query      321 SKRRGAALLKNIKGSMTGLIGEKDREIHQALETKLSKNASSSCPSPPHPSTSTTAAPTSSEWVKVRQSGKSYKELSALHF 400 
WD40-rpts        (______________________________WD 4_____________________________)(____________

Query      401 CQEIQAHEGSIWTMKFSCDARLLASAGEDRVIHIWEVQECEVMSMKPNEEGSMTPLHPSICPSPDRPAIGDASALSSEKR 480 
WD40-rpts      __________WD 5_____________________)   (___________________WD 6_________________

Query      481 KKGKGISGSRKGNVIPDYVHVPESVFSLSEKPIYTLNGHLDDVLDLSWSSDSQLLLSSSTDKTVRLWDMETKSCLKMFAH 560 
WD40-rpts      _)                           (_________________WD 7________________)  (_________

Query      561 NDYVTCVQFNPMDDDYFISGALDAKVRIWNIPDRYVVDWTDLHEMVTAASYTPDGQGAVIGCHKGTCRMYSIEDSKLEQK 640 
WD40-rpts      ________WD 8_________________)   (________________WD 9________________)         

Query      641 HQVDVQSKKKNHGKKITGFQFVPGSPTEVLVTSADSRIRILEGTDVTHRFRGFRNTSSQITASFSQDGKYVICASEDSQV 720 
WD40-rpts         (_________________WD10________________)   (_________________WD11_____________

Query      721 FVWKREEPRNPNSAKKGLMAIRGYEHFPCKDVSVAIPWPGMISGEPPLVQMNSKRHSKRGLTQPASAGSSPTRDENNSIA 800 
WD40-rpts      ___)   (_________________WD12________________)   (_________________WD13_________

Query      801 NNKKQLPPLPKKNNNAVENNNNNNNNNGGSTSTTPPDEEQQQQAQVTRSESRTGESPSSSPSASIRHGDSPSLSSSAAIS 880 
WD40-rpts      _______)                                                 (_________________WD14_

Query      881 NNPTSSSWSSSWSWFDVGNSHGHHAIPATAWGLVIVTAGLGGEIRAYQNFGLPRRIGRQTNFWPTT 946 
WD40-rpts      _______________)                                                  

14 WD40-repeats found in QUERY=CsaV3_4G024950 (Len=946):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   131-169      2.96  237.12  0.03897       17.5%     -1.18
  WD 2:  Seg  3   224-265      3.73  268.82  0.01475        7.5%     39.16
  WD 3:  Seg  7   274-312      6.24  372.39  0.00060       17.5%     42.08
  WD 4:  Seg 12   323-387      5.79  353.67  0.00107       15.0%     25.35
  WD 5:  Seg 15   388-436      8.80  478.12  2.2e-05       27.5%     55.02
  WD 6:  Seg 19   440-482      6.52  383.93  0.00042       20.0%     39.01
  WD 7:  Seg 23   510-548      8.20  453.21  4.8e-05       37.5%     53.08
  WD 8:  Seg 27   551-590      7.52  425.18  0.00012       27.5%     53.41
  WD 9:  Seg 31   594-631      7.13  409.24  0.00019       27.5%     53.54
  WD10:  Seg 36   644-682      6.77  394.46  0.00030       17.5%     49.06
  WD11:  Seg 39   686-724      8.67  472.64  2.7e-05       32.5%     57.02
  WD12:  Seg 43   728-766      6.91  400.15  0.00025       10.0%     38.95
  WD13:  Seg 46   770-808      4.50  300.50  0.00554        5.0%     -12.86
  WD14:  Seg 47   858-896      4.42  297.42  0.00609       12.5%     -3.05

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  131-169    -PE---------T---------------VGS----------PEVVDQKQD----APAQTP-LPI-MLV---RSRSDGDIDTFS
   WD 2  224-265    -TL---------S---------------TVF----------SNNRLGAFF----LIKNLD-TGK-EFIVNGYDQDGMWNRLSD
   WD 3  274-312    -ME---------E---------------FEK----------CVGYSPVVT----ELMRRE-NVS-RIN---GFFGDRKLNVNS
   WD 4  323-387    RRG---------AALLKNIKGSMTGLIGEKDREIHQALETKLSKNASSSC----PSPPHP-STS-TTA---APTSSEWVKVRQ
   WD 5  388-436    SGKSYKELSALHF---------------CQE----------IQAHEGSIW----TMKFSC-DAR-LLA---SAGEDRVIHIWE
   WD 6  440-482    -CE---------V---------------MSM----------KPNEEGSMTPLHPSICPSP-DRP-AIG---DASALSSEKRKK
   WD 7  510-548    -EK---------P---------------IYT----------LNGHLDDVL----DLSWSS-DSQ-LLL---SSSTDKTVRLWD
   WD 8  551-590    -TK---------S---------------CLK----------MFAHNDYVT----CVQFNPMDDD-YFI---SGALDAKVRIWN
   WD 9  594-631    -RY---------V---------------VDW----------TDLHEM-VT----AASYTP-DGQ-GAV---IGCHKGTCRMYS
   WD10  644-682    --D---------V---------------QSK----------KKNHGKKIT----GFQFVP-GSPTEVL---VTSADSRIRILE
   WD11  686-724    -VT---------H---------------RFR----------GFRNTSSQI----TASFSQ-DGK-YVI---CASEDSQVFVWK
   WD12  728-766    -PR---------N---------------PNS----------AKKGLMAIR----GYEHFP-CKD-VSV---AIPWPGMISGEP
   WD13  770-808    -QM---------N---------------SKR----------HSKRGLTQP----ASAGSS-PTR-DEN---NSIANNKKQLPP
   WD14  858-896    -SS---------S---------------PSA----------SIRHGDSPS----LSSSAA-ISN-NPT---SSSWSSSWSWFD

   WD40 Template    TGE---------C---------------LRT----------LSGHTSGVT----SVSFSP-DGK-RLV---SGSEDGTIKVWD