Input parameters:

  Query = mm2 (Len=763)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (mm2, Len=763):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKNFLPRTLKNIYELYFNNISVHSIVSRNTQLKRSKIIQMTTETFEDIKLEDIPVDDIDFSDLEEQYKVTEEFNFDQYIV 80  
WD40-rpts                                                                                      

Query       81 VNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTM 160 
WD40-rpts                                                                                      

Query      161 KDVERYNSDDFDTEFREPDMPTFVPSSSLKSWLMDDKVRDQFVLQDDVKTSVFWNSMFNEEDSLVESRENWSTNYVRFSP 240 
WD40-rpts                                                            (___________________WD 1__

Query      241 KGTYLFSYHQQGVTAWGGPNFDRLRRFYHPDVRNSSVSPNEKYLVTFSTEPIIVEEDNEFSPFTKKNEGHQLCIWDIASG 320 
WD40-rpts      ________________)(_________________WD 2_________________)                       

Query      321 LLMATFPVIKSPYLKWPLVRWSYNDKYCARMVGDSLIVHDATKNFMPLEAKALKPSGIRDFSFAPEGVKLQPFRNGDEPS 400 
WD40-rpts                                                  (_________________WD 3______________

Query      401 VLLAYWTPETNNSACTATIAEVPRGRVLKTVNLVQVSNVTLHWQNQAEFLCFNVERHTKSGKTQFSNLQICRLTERDIPV 480 
WD40-rpts      __)                     (_________________WD 4________________)           (_____

Query      481 EKVELKDSVFEFGWEPHGNRFVTISVHEVADMNYAIPANTIRFYAPETKEKTDVIKRWSLVKEIPKTFANTVSWSPAGRF 560 
WD40-rpts      ____________WD 5_________________)                                              

Query      561 VVVGALVGPNMRRSDLQFYDMDYPGEKNINDNNDVSASLKDVAHPTYSAATNITWDPSGRYVTAWSSSLKHKVEHGYKIF 640 
WD40-rpts                                                                                      

Query      641 NIAGNLVKEDIIAGFKNFAWRPRPASILSNAERKKVRKNLREWSAQFEEQDAMEADTAMRDLILHQRELLKQWTEYREKI 720 
WD40-rpts                                                                                      

Query      721 GQEMEKSMNFKIFDVQPEDASDDFTTIEEIVEEVLEETKEKVE 763 
WD40-rpts                                                 

5 WD40-repeats found in QUERY=mm2 (Len=763):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8   215-257      3.29  250.42  0.02596       27.5%     45.13
  WD 2:  Seg 11   258-297      5.44  339.22  0.00167       27.5%     36.01
  WD 3:  Seg 19   365-403      3.40  255.12  0.02247       22.5%     21.05
  WD 4:  Seg 22   425-463      3.07  241.57  0.03404       15.0%     34.11
  WD 5:  Seg 25   475-514      4.36  294.87  0.00659       15.0%     37.78

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  215-257    NSMFNEEDSLVESRENWSTNYVRFSPKGTYLFSYHQQG-VTAWG
   WD 2  258-297    GP----NFDRLRRFYHPDVRNSSVSPNEKYLVTFSTEPIIVEED
   WD 3  365-403    -F----MPLEAKALKPSGIRDFSFAPEGVKLQPFRNGDEPSVLL
   WD 4  425-463    -G----RVLKTVNLVQVSNVTLHWQNQAEFLCFNVERHTKSGKT
   WD 5  475-514    ER----DIPVEKVELKDSVFEFGWEPHGNRFVTISVHEVADMNY

   WD40 Template    TG----ECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD