WDRR: WD40 Repeat Recognition
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| JobID: LKK3Q1451074479 Submitted: 2015-12-26 04:14:39 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 288176477 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = sp_Q5AGV4_EIF3B_CANAL (Len=739) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (sp_Q5AGV4_EIF3B_CANAL, Len=739): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSINEEDYLQLEKEIKLDDIDFSDLEEKYEVNIGLDNYIIVDGAPIAPEAKVPVLIKVLRKLFSQVGEIVEGDEGIYMPL 80
WD40-rpts
Query 81 ENGKSKGYLFIQFKSTESADLAIKKLHGKKLDQNHRLLVNKLSDMEKYGVDGAVNEEFIEPEIEPFQSHGYLKSWLQDEQ 160
WD40-rpts
Query 161 GRDQMVLHFSETVGVYWNKKSADPEPVIEPRKGFTSKYAKFSPKGTYLFSIHPQGIQSWGGANFNSIKRFFHQQVRLVDF 240
WD40-rpts (______________WD 1______________)
Query 241 SPNEKFMVTLSPIPISLPDSTVDRAQFPFGPESEGHKLVIWNMITGEPVRTFALPPHLEGQKEMPWPLVKWSYDDKYCAR 320
WD40-rpts (_________________WD 2________________) (_________________WD 3_______
Query 321 QGPDALAIYETESNFQLLDKKLVKVDGIQDFEWAPAGVKLHNSKAVDGKHVLSYWTPESTNQTARVALMQIPSREILRTV 400
WD40-rpts __________) (______________WD 4______________) (______
Query 401 NLFQVSDCKMHWQSNGKLLCVKVDRHTKSGKTIFSNLEFFKTNERDIPVEKLELKDVVVNFAWEPNTERFITISRLDDGN 480
WD40-rpts ___________WD 5________________) (_________________WD 6______________
Query 481 PNPAIPKNTISFYAPEVTKGGVNHNSKKKGGAAIAAAVAAAAINNQSSTKYKAYTKIENKHSNTIFWSPKGRYVVVATIS 560
WD40-rpts __) (_________________WD 7________________) (__________________WD 8_________
Query 561 RTSGELEFFDVSFDDETNKKSLPANVKLLKTDKFSGMTNISWDPSGRFVAAWSTSWLHAIENGYRLYEFTGNLLRDDSID 640
WD40-rpts _________) (____________________WD 9___________________)
Query 641 QFKDFVWRPRPPSLLTNSDKKKVRSNLREYSAQFEEADAMEADAAVKEIILARRKALEEWRKYRAKHISKQGNSKNEVQA 720
WD40-rpts
Query 721 EIIEEIKEEIIEEKEEIVE 739
WD40-rpts
 9 WD40-repeats found in QUERY=sp_Q5AGV4_EIF3B_CANAL (Len=739): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 8 187-220 2.79 229.89 0.04854 25.0% 31.48 WD 2: Seg 13 244-282 5.36 336.21 0.00183 15.0% 7.82 WD 3: Seg 16 292-331 3.42 255.76 0.02204 12.5% 23.87 WD 4: Seg 20 340-373 3.16 245.38 0.03029 12.5% 28.44 WD 5: Seg 25 394-432 3.58 262.57 0.01788 20.0% 40.05 WD 6: Seg 29 445-483 4.58 303.68 0.00502 10.0% 27.68 WD 7: Seg 32 487-525 4.35 294.26 0.00672 2.5% 28.83 WD 8: Seg 35 529-570 4.10 283.94 0.00925 15.0% 50.21 WD 9: Seg 39 584-628 3.49 258.63 0.02018 17.5% 50.99Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 187-220 VIEPRKGFT-----SKYAKFSPKGTYLFSIHP------Q---G-IQSWG WD 2 244-282 -EKFMVTLSPIPISLPDSTVDRAQFPFGPESE------G---HKLVIWN WD 3 292-331 FALPPHLEGQKEMPWPLVKWSYDDKYCARQGP------D---ALAIYET WD 4 340-373 ------KKLVKVDGIQDFEWAPAGVKLHNSKA------V---DGKHVLS WD 5 394-432 -REILRTVNLFQVSDCKMHWQSNGKLLCVKVD------R---HTKSGKT WD 6 445-483 -RDIPVEKLELKDVVVNFAWEPNTERFITISR------L---DDGNPNP WD 7 487-525 -KNTISFYAPEVTKGGVNHNSKKKGGAAIAAA------V---AAAAINN WD 8 529-570 -TKYKAYTKIENKHSNTIFWSPKGRYVVVATI------SRTSGELEFFD WD 9 584-628 -ANVKLLKTDKFSGMTNISWDPSGRFVAAWSTSWLHAIE---NGYRLYE WD40 Template TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSE------D---GTIKVWD |
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