Input parameters:

  Query = TPL (Len=1131)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (TPL, Len=1131):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80  
WD40-rpts                                                                                      

Query       81 YLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDK 160 
WD40-rpts                                                                                      

Query      161 LQFPTLRNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPFQ 240 
WD40-rpts                                                                                      

Query      241 PTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGGPSIPAALKHPRTPPTNASLDYPSADSEHVSKRTRPMGISDEVNLGV 320 
WD40-rpts                                                                                      

Query      321 NMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQGSSPMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWD 400 
WD40-rpts                                                                                      

Query      401 LSKCSMPLQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQLCVI 480 
WD40-rpts                                                                                      

Query      481 TCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNMGSRVDYDAPGRWCTTMAYSA 560 
WD40-rpts                    (__________________WD 1__________________)                        

Query      561 DGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGG 640 
WD40-rpts                              (__________________WD 2_________________)               

Query      641 LQASPRIRFNKEGSLLAVSGNENVIKIMANSDGLRLLHTFENISSESSKPAINSIAAAAAAAATSAGHADRSANVVSIQG 720 
WD40-rpts                                                                                      

Query      721 MNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPENLRVAKISRLIFTNSGNAILALASNAIHLLWKWQRN 800 
WD40-rpts                                                                                      

Query      801 ERNATGKATASLPPQQWQPASGILMTNDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAAT 880 
WD40-rpts                                                                                      

Query      881 FLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGWEKQRSKVLP 960 
WD40-rpts                                                                                      

Query      961 LPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMKQWAVRESLAPITHATFSCDSQLVYASFMDATVCVFS 1040
WD40-rpts                                                                                      

Query     1041 SANLRLRCRVNPSAYLPASLSNSNVHPLVIAAHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENGSASGAPTAPS 1120
WD40-rpts                                                                                      

Query     1121 VGASASDQPQR 1131
WD40-rpts                 

2 WD40-repeats found in QUERY=TPL (Len=1131):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 17   495-536      3.32  251.62  0.02502       35.0%     23.45
  WD 2:  Seg 25   585-625      3.30  251.12  0.02541       32.5%     23.82

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  495-536    TGVKRHTFEG-HEAPVYSVCPHYKENIQFIFSTALDGKIKAWL
   WD 2  585-625    EGAVKRTYQGFHKRSLGVV--QFDTTKNRYLAAGDDFSIKFWD

   WD40 Template    TGECLRTLSG-HTSGVTSV--SFSPDGKRLVSGSEDGTIKVWD