Input parameters:

  Query = CsaV3_5G039870 (Len=344)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_5G039870, Len=344):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNLASTPKASISHDQPVLCSAWKDDGT 80  
WD40-rpts               (_________________WD 1________________)        (_________________WD 2__

Query       81 TVFSGGCDKQVKMWPLLSGGQAMTVAMHDAPVKEVAWIPELNLLVSGSWDKTLKYWDTRQPNPVHTQQLPDRCYSMAVRH 160 
WD40-rpts      ______________)   (_________________WD 3________________)   (_______________WD 4

Query      161 PLMVVGTADRNLIVFNLQNPQSEFKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDESMANKNFTFKCHRDGSE 240 
WD40-rpts      _______________)     (_________________WD 5________________)     (______________

Query      241 IYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRCSQPISCSTFNQDGSIFAYSVCYDWSKGAENHNPATAKT 320 
WD40-rpts      _____WD 6___________________)   (_________________WD 7_________________)        

Query      321 YIYLHLPQEVEVKGKPRVGGGGRK 344 
WD40-rpts                              

7 WD40-repeats found in QUERY=CsaV3_5G039870 (Len=344):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    10-48       9.53  508.17  8.8e-06       27.5%     55.41
  WD 2:  Seg  6    57-95       8.65  471.87  2.7e-05       22.5%     47.63
  WD 3:  Seg  9    99-137      9.96  526.06  5.1e-06       40.0%     57.49
  WD 4:  Seg 13   141-176      6.20  370.95  0.00062       15.0%     51.85
  WD 5:  Seg 17   182-220      8.15  451.41  5.1e-05       25.0%     54.54
  WD 6:  Seg 21   226-269      7.70  432.57  9.2e-05       27.5%     56.17
  WD 7:  Seg 25   273-312      6.55  385.12  0.00040       15.0%     51.46

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   10-48     NKSFEVAQPPSDS-----VSSLSFSPKANHLVAT-SWDNQVRCWE
   WD 2   57-95     ASTPKASISHDQP-----VLCSAWKDDGTTVFSG-GCDKQVKMWP
   WD 3   99-137    GGQAMTVAMHDAP-----VKEVAWIPELNLLVSG-SWDKTLKYWD
   WD 4  141-176    PNPVHTQQLP--------DRCYSMAVRHPLMVVG-TADRNLIVFN
   WD 5  182-220    SEFKRIVSPLKYQ-----TRCVAAFPDQQGFLVG-SIEGRVGVHH
   WD 6  226-269    ANKNFTFKCHRDGSEIYSVNSLNFHPVHHTFATA-GSDGAFNFWD
   WD 7  273-312    KQRLKAMSRCSQP-----ISCSTFNQDGSIFAYSVCYDWSKGAEN

   WD40 Template    GECLRTLSGHTSG-----VTSVSFSPDGKRLVSG-SEDGTIKVWD