WDRR: WD40 Repeat Recognition
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| JobID: LBYRH1659514122 Submitted: 2022-08-03 16:08:42 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79730211 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_2G006820 (Len=1127) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_2G006820, Len=1127): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFYFNMKYFEDKVQAGEWEEVEKYLSGYTKVDDNRYSMKIFFEIRKQK 80
WD40-rpts
Query 81 YLEALDRSDKAKAVEILVSDLKVFSTFNEELYKEITQLLTLTNFRENEQLSKYGDTKAARSIMLIELKKLIEANPLFRDK 160
WD40-rpts
Query 161 LVFPALKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFMDHTCSPPNGPLAPTPVNLPVAKPAPYAPLGAHSPFPPTGA 240
WD40-rpts
Query 241 TANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSILKHARTPPSNPGMVDYQNPEHDQLMKRLRSAQSVEEVTYPA 320
WD40-rpts (______________WD 1______
Query 321 PRQQASWSIEDLPRTVAFTLHQGSTVTSMDFHPTHHTLLLVGSNNGEVTLWELGIRERLISKPFKLWDLSSRSLAFQAAI 400
WD40-rpts _______)(___________________WD 2___________________) (______
Query 401 VKDTPISVSRVTWSPDGTFVGVAFTKHLVHLYSYNSSNELNQQSEIDAHVGGVNDLAFAHPNKQLCVVTCGEDKLIKVWD 480
WD40-rpts ___________WD 3_________________) (_________________WD 4________________)
Query 481 IGGRKLFTFEGHEASVYSICPHHKENIQFIFSTALDGKIKAWLYDHMGSRVDYDAPGKWCTTMLYSADGSRLFSCGTSKD 560
WD40-rpts (__________________WD 5_________________) (___________________WD 6__________
Query 561 GDSYLVEWNESEGAIKRTYLGFRKKSTGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTYTDAEGGLPSLPRLRFNKEG 640
WD40-rpts ________) (_________________WD 7_________________)(___________________WD 8____
Query 641 NLLAVTTDNGFKILANAVGMRSLKAIESTTPFEALRSPMESALKVSGPSAVASVSPVNCKVERSSPVRPPSIINGVEGLG 720
WD40-rpts _______________)(_________________WD 9_________________) (________________
Query 721 RNLDKARTVEDAIDKAKPWQLAEIVDPASCRLVTMPDNADSSHKVVRLLYTNSGVGLLALGSNGIQKLWKWTRNEQNPSG 800
WD40-rpts WD10________________) (____________________WD11___________________)
Query 801 KATANVVPQHWQPNSGLLMTNDVLGVNLEEAVPCIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHP 880
WD40-rpts (____________________WD12___________________) (_________________WD1
Query 881 QDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCLWSIDTWEKRKSITIQLPAGKA 960
WD40-rpts 3_________________) (_________________WD14________________) (_______________
Query 961 PVGDTRVQFHSDQIRLLVVHETQIAIYDASKMDRIRQWVPQDALPAPISYAAYSCNSQLVYATFCDGNVGVFDADTLRLR 1040
WD40-rpts ____WD15___________________)(____________________WD16___________________)
Query 1041 CRIAPSVYLPSAVLNSSQAIYPLVVATHPLDPNQLAIGLSDGSVKVIEPTESEGKWGVSPPMDNGILNGRTASSSTTSNH 1120
WD40-rpts (____________________WD17___________________)
Query 1121 TPDQIQR 1127
WD40-rpts
 17 WD40-repeats found in QUERY=CsaV3_2G006820 (Len=1127): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 3 296-328 3.92 276.72 0.01156 7.5% 37.03 WD 2: Seg 6 329-372 6.60 387.26 0.00038 32.5% 51.96 WD 3: Seg 12 394-433 7.14 409.75 0.00019 15.0% 48.48 WD 4: Seg 16 442-480 7.41 420.69 0.00013 35.0% 49.67 WD 5: Seg 20 483-523 7.58 427.76 0.00011 32.5% 57.33 WD 6: Seg 24 527-569 6.46 381.62 0.00045 22.5% 53.49 WD 7: Seg 28 573-612 7.24 413.60 0.00017 30.0% 57.93 WD 8: Seg 32 613-656 6.75 393.64 0.00031 12.5% 54.46 WD 9: Seg 36 657-696 5.75 352.13 0.00112 10.0% 42.62 WD10: Seg 41 704-741 4.86 315.41 0.00349 15.0% 15.02 WD11: Seg 44 746-790 6.76 393.89 0.00031 17.5% 51.35 WD12: Seg 49 812-856 4.81 313.39 0.00372 12.5% 47.56 WD13: Seg 53 860-899 7.24 413.93 0.00016 25.0% 60.62 WD14: Seg 57 903-941 8.94 484.06 1.9e-05 30.0% 58.55 WD15: Seg 61 945-988 4.02 280.65 0.01024 25.0% 50.28 WD16: Seg 65 989-1033 6.62 387.94 0.00037 15.0% 49.31 WD17: Seg 70 1044-1088 5.80 354.27 0.00105 17.5% 47.91Multiple sequence alignment of 17 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 296-328 ------------------QN------PEHD------QLMKR--LRSA---QSV-EE--VTY----PAPRQQASWS WD 2 329-372 IE--D----LPR-----TVA---FTLHQGS------TVTSM--DFHP---THHTLL--LVG----SNNGEVTLWE WD 3 394-433 --LAF----QAA-----IVK------DTPI------SVSRV--TWSP---DGT-FV--GVA----FTKHLVHLYS WD 4 442-480 ---------QQS-----EID------AHVG------GVNDL--AFAH---PNK-QLCVVTC----GEDKLIKVWD WD 5 483-523 -G--R----KLF-----TFE------GHEA------SVYSICPHHKE---NIQ-FI--FST----ALDGKIKAWL WD 6 527-569 -M--G----SRV-----DYD------APGK------WCTTM--LYSA---DGS-RL--FSCGTSKDGDSYLVEWN WD 7 573-612 -G--A----IKR-----TYL------GFRK-----KSTGVV--QFDT---TQN-HF--LAV----GEDSQIKFWD WD 8 613-656 MD--NVNILTYT-----DAE------GGLP------SLPRL--RFNK---EGN-LL--AVT----TDNGFKILAN WD 9 657-696 AV--G----MRS-----LKA------IEST------TPFEA--LRSP---MES-AL--KVS----GPSAVASVSP WD10 704-741 ----S----SPV-----RPP------SIIN------GVEGL--GRNL---DKA-RT--VED----AIDKAKPWQL WD11 746-790 DP--A----SCR-----LVT-MPDNADSSH------KVVRL--LYTN---SGV-GL--LAL----GSNGIQKLWK WD12 812-856 QP--N----SGL-----LMTNDVLGVNLEE------AVPCI--ALSK---NDS-YV--MSA----S-GGKVSLFN WD13 860-899 -F--K----VMT-----TFM------PPPP------ASTFL--AFHP--QDNN-II--AIG----MEDSTIHIYN WD14 903-941 -D--E----VKS-----KLK------GHQK------RITGL--AFST---SLN-IL--VSS----GADAQLCLWS WD15 945-988 -W--E----KRK-----SIT------IQLPAGKAPVGDTRV--QFHS---DQI-RL--LV-----VHETQIAIYD WD16 989-1033 AS--K----MDRIRQWVPQD------ALPA------PISYA--AYSC---NSQ-LV--YAT----FCDGNVGVFD WD17 1044-1088 AP--S--VYLPS-----AVL------NSSQ------AIYPL--VVATHPLDPN-QL--AIG----LSDGSVKVIE WD40 Template TG--E----CLR-----TLS------GHTS------GVTSV--SFSP---DGK-RL--VSG----SEDGTIKVWD |
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