Input parameters:

  Query = CmaCh09G008800 (Len=1182)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh09G008800, Len=1182):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNKFVDENDDEECFYESLDRIASSSSCSTSNSDDDRDSNGNSPNYDSEHPFAVPKFPMAVSDYDIWISEPASVLERRRRL 80  
WD40-rpts                                                                                      

Query       81 LQEMGLSGDPSLSRANTTLELDHSEMGVGDFGRSVSSDSLSSQQQQPPAIISSKSASGSDTNNQCNYSSSINSPSIFSFH 160 
WD40-rpts         (______________WD 1______________)                                           

Query      161 SVNETITSFANSYNPVVVKSQSCKSEGVPLVALAASQHKPPSGKNSRWVDEIRSDSLIVSTNSDPDPSSMSQNGVNRRQV 240 
WD40-rpts                                                                                      

Query      241 SEDSHCSTSEKVNEKVCTIKDLDNGKEFVLNEITEDGMWNKLKEVGTGKQLTMEEFDKCVGHSPIVQELMRRQIVEDGCN 320 
WD40-rpts        (__________________WD 2__________________)          (________________WD 3_____

Query      321 ENVDLNVNGDIGSSSKLKKKGGWFKGIKSVTGTVKGQKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGPERVRVRQY 400 
WD40-rpts      __________)  (_________________WD 4________________)________________WD 5________

Query      401 GKSSKELSALYKSQEIQAHTGSIWTIKFSLDGKYLASAGEDRIIHVWQVIESEKKGELLMEKPEEGNLSFLFAANESPEP 480 
WD40-rpts      ________)     (______________WD 6______________)        (_________________WD 7__

Query      481 TSLSPNVDSYHEKKRRGRSSISRKSVSLEQIIVPDTGHLDVVLDLSWSKSQHLLSSSMDKTVRLWHLSSNSCLKIFSHSD 560 
WD40-rpts      _______________)            (________________WD 8________________)          (___

Query      561 YAISKFVSDVYPAAVTCIQFNPIDDRYFISGSLDAKVRIWSIPDRQVVDWSDLHEMVTAACYTPDGKFAPGSSTEVLITS 640 
WD40-rpts      _________________WD 9___________________)   (____________________WD10___________

Query      641 ADSRIRLVDGVDLVQRFKGFRNTNSQISACLSANGRYVISASEDSHVYIWKHEADSRPSRSKGVTVVRSYEHFHCQDVSV 720 
WD40-rpts      ________)   (_________________WD11________________)   (________________WD12_____

Query      721 AIPWPGTGDIWGLHDDFYGDYDNVIENHLDEVSSANHPPSPVEVENGSEDSLLASGCTNSPLHGTLSSATNSYFFDRIAA 800 
WD40-rpts      ___________)      (_________________WD13________________)_______________WD14____

Query      801 TRPEEKLVPNTQINRSPHSSLDIGHGMFEGSPGWGMNQVPCYPMLVLVGDTDTDTDTNTDEHVRWEKTKFVVNVNCLTKC 880 
WD40-rpts      ___________)                                                                    

Query      881 QRELNQQIGAIRAQTTATIAPEVNKAAPDGKKTLRKGSVVITGASSGLGLATAKALAETGKWHVIMACRDFLKAERAAKS 960 
WD40-rpts                                                                                      

Query      961 AGISKENYTVMHLDLASLDSVRQFVDNFRQSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLED 1040
WD40-rpts                                                                                      

Query     1041 LNKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLAGGLSGLNSSSMIDGGEFDGAKAYKDSKVCNMLTMQEFHR 1120
WD40-rpts                                                                                      

Query     1121 RYHEETGITFASLYPGCIATTGVYWSWNKNSASFENQLSQEASDAEKARRVWELSEKLVGLA 1182
WD40-rpts                                                                    

14 WD40-repeats found in QUERY=CmaCh09G008800 (Len=1182):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    84-117      3.11  243.05  0.03253       10.0%      0.91
  WD 2:  Seg  3   243-284      5.65  347.89  0.00128       15.0%     36.47
  WD 3:  Seg  6   295-331      5.50  341.80  0.00154       10.0%     14.12
  WD 4:  Seg  7   334-372      5.28  332.89  0.00203       17.5%     33.21
  WD 5:  Seg 10   371-409      6.09  366.20  0.00072       17.5%     28.84
  WD 6:  Seg 13   415-448      8.76  476.51  2.4e-05       35.0%     49.35
  WD 7:  Seg 16   457-496      7.11  408.45  0.00019       15.0%     15.31
  WD 8:  Seg 17   509-546      7.21  412.35  0.00017       27.5%     49.16
  WD 9:  Seg 22   557-601      7.75  434.96  8.5e-05       25.0%     46.37
  WD10:  Seg 25   605-649      5.78  353.56  0.00107       27.5%     52.18
  WD11:  Seg 29   653-691      8.59  469.53  2.9e-05       22.5%     57.27
  WD12:  Seg 32   695-732      5.10  325.46  0.00256       15.0%     45.39
  WD13:  Seg 36   739-777      8.46  463.92  3.5e-05       22.5%     41.91
  WD14:  Seg 38   776-812      3.16  245.10  0.03056       17.5%     13.38

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   84-117    MG----------LSGDPSLSRANTTL-ELD-------HSEMG---VGDFGRSVSS
   WD 2  243-284    -DS----HCSTSEKVNEKVCTIKDLD-NGK-------EFVLNEITEDGMWNKLKE
   WD 3  295-331    EFD-------KCVGHSPIVQELMRRQ-IVE-------DGCNE---NVDLNVNGDI
   WD 4  334-372    -SS----KLKKKGGWFKGIKSVTGTV-KGQ-------KERRS---SDERDTSSEK
   WD 5  371-409    -EK----GGRRSSSATDDSQDVSFHG-PER-------VRVRQ---YGKSSKELSA
   WD 6  415-448    ----------EIQAHTGSIWTIKFSL-DGK-------YLASA---GEDRIIHVWQ
   WD 7  457-496    ELL----MEKPEEGNLSFLFAANESP-EPT-------SLSPN---VDSYHEKKRR
   WD 8  509-546    -EQ----IIVPDTGHLDVVLDLSWSK-SQ--------HLLSS---SMDKTVRLWH
   WD 9  557-601    SHSDYAISKFVSDVYPAAVTCIQFNPIDDR-------YFISG---SLDAKVRIWS
   WD10  605-649    -RQ----VVDWSDLHEM-VTAACYTP-DGKFAPGSSTEVLIT---SADSRIRLVD
   WD11  653-691    -LV----QRFKGFRNTNSQISACLSA-NGR-------YVISA---SEDSHVYIWK
   WD12  695-732    -DS----RPSRSKGVTVVRSYEHFHC-QDV-------SVA-I---PWPGTGDIWG
   WD13  739-777    -GD----YDNVIENHLDEVSSANHPP-SPV-------EVENG---SEDSLLASGC
   WD14  776-812    -GC----TNSPLHGTLSSATNSYFFD-RIA---------ATR---PEEKLVPNTQ

   WD40 Template    TGE----CLRTLSGHTSGVTSVSFSP-DGK-------RLVSG---SEDGTIKVWD