WDRR: WD40 Repeat Recognition
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| JobID: L7F1X1659505809 Submitted: 2022-08-03 13:50:09 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79745100 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh20G008200 (Len=1236) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh20G008200, Len=1236): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MPSRAFVDFLHLRVYRLKMLTKFETKSNRVKGLSFHTKRPWILASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFHKS 80
WD40-rpts (_________________WD 1________________) (_________________WD 2
Query 81 QPLFVSGGDDYKIKVWNHKTHKCLFTLLGHLDYIRTVQFHHECPWIVSASDDQTIRLWNWQSRTCISVLTGHNHYVMCAS 160
WD40-rpts ________________) (_________________WD 3________________) (_________________
Query 161 FHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDVLRLSQMNSDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSG 240
WD40-rpts WD 4________________) (_________________WD 5_______
Query 241 ADDRQVKLWRMNDTKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRIWDATKRTGLQTFRREHDRFWILAAHPEM 320
WD40-rpts _________)(___________________WD 6___________________) (________________WD 7__
Query 321 NLLAAGHDSGMIVFKLERERPAFAISGDSLFYIKDRFLRFYEFSTQKDTQVTPIRRPGSTSLNQSPRSLSFSPTENAVLI 400
WD40-rpts ______________)
Query 401 CSDLDGGCYELYTIPRDSFGRGDNVQDAKRGTGGSAVFVARNRFAVLDKSNNQVLLKNLRNEVVKKTPLPITTDAIFYAG 480
WD40-rpts (_________________WD 8________________)
Query 481 TGNLLCRAEDKVVIYDLQQRIVLGDLQTPFVKYVIWSNDMESVALLSKHAIIIANKKLVHQCTLHETIRVKSGGWDDNGV 560
WD40-rpts (_________________WD 9_________________)
Query 561 FIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTLFCLDRDGINQRFIIDATEYIFKLSLLRKRFDHVMSMIRNSQL 640
WD40-rpts
Query 641 CGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASATAIDEKDHWYRLGVEALRQGNAGIVEYAYQKTKNF 720
WD40-rpts
Query 721 DRLSFLYLITGNTAKLSKMLKIAEVKNDVMGQFHNALYLGDVRERIKILESVGHLPLAYITASTHGLHDVAERLAAELGD 800
WD40-rpts
Query 801 NVPSLPEGKAASLLLPPTPVMCAGDWPLLRVMKGIFEGGLDNVGGGPADDDEEVADGDWGEELEVVDVDGLQNGDVTAIL 880
WD40-rpts
Query 881 EDREGAEEDEEEGGWDLEDLELPPEADTPKVSVSARSSVFVAPTPGLPASQAWIQRSSLAAEHVAAGNFDTAMRLLNRQL 960
WD40-rpts
Query 961 GIKNFAPLRTMFLDLHAGSQTYIRALSSVPILTLAVERGYNESGNANAKGSPALIFSFSQLEEKLKAGYKATTSGKFAEA 1040
WD40-rpts
Query 1041 LRLFLGILHTIPLIVVESRREVDEVKELIIIVKEYVLGLQIELKRRELKDNPTRQMELAAYFTHCNLQMPHLRLALLNAM 1120
WD40-rpts
Query 1121 TVCYKAKNLASAANFARRLLETNPPVENQAKTARQVIQAAERNMKDSHQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYC 1200
WD40-rpts
Query 1201 SSRFVPSQEGQLCSVCDLAVVGADASGLHCSPTQVR 1236
WD40-rpts
 9 WD40-repeats found in QUERY=CmaCh20G008200 (Len=1236): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 17-55 5.21 329.67 0.00224 20.0% 54.13 WD 2: Seg 6 59-97 7.42 420.99 0.00013 32.5% 56.77 WD 3: Seg 10 101-139 8.45 463.76 3.5e-05 37.5% 57.30 WD 4: Seg 14 143-181 8.86 480.59 2.1e-05 40.0% 54.47 WD 5: Seg 19 212-250 7.45 422.21 0.00013 32.5% 56.92 WD 6: Seg 23 251-294 8.42 462.43 3.6e-05 37.5% 55.44 WD 7: Seg 27 298-335 3.29 250.71 0.02573 17.5% 55.13 WD 8: Seg 38 420-458 2.89 233.87 0.04302 10.0% 47.42 WD 9: Seg 46 497-536 3.45 257.10 0.02115 17.5% 44.36Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 17-55 -LKM----LTKFETKSNRVKGLSFHTKRPWILASLHSGVIQLWD WD 2 59-97 -GTL----IDRFDEHEGPVRGVHFHKSQPLFVSGGDDYKIKVWN WD 3 101-139 -HKC----LFTLLGHLDYIRTVQFHHECPWIVSASDDQTIRLWN WD 4 143-181 -RTC----ISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWD WD 5 212-250 -AVV----KYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR WD 6 251-294 MNDTKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRIWD WD 7 298-335 -RTG----LQTFRREHDRFWILAAHPEMNLLAAGH-DSGMIVFK WD 8 420-458 -GRG----DNVQDAKRGTGGSAVFVARNRFAVLDKSNNQVLLKN WD 9 497-536 LQQR----IVLGDLQTPFVKYVIWSNDMESVALLSKHAIIIANK WD40 Template TGEC----LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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