WDRR: WD40 Repeat Recognition
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| JobID: L2LYO1659501034 Submitted: 2022-08-03 12:30:34 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79751133 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh13G010630 (Len=437) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh13G010630, Len=437): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MEGSFEQTLQDGKLYRQVNSLIVAHLRDHNLTQAASAAASASRTPLNVDVPPNKLMELVAKGLAVEKEEMLRGSPASALY 80
WD40-rpts (____________WD 1___________) (_______
Query 81 EFGSSVPSTFGSTQPSRASAIDFSTVQDTKGSSKNFPKHETRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKI 160
WD40-rpts _________WD 2________________) (_________________WD 3________________)
Query 161 KQMMLPDSKDGPVRPVIRTFYDHIQPINDLDFHPQNTVLISGAKDQTIKFFDFSKLTAKKAFRVIQDTHNVRSISLHPSG 240
WD40-rpts (_________________WD 4________________) (_________________WD 5_
Query 241 DYLLAGTDHPIAHLYDVNTFQCFLSANVPEIGNSGAINQVRYSATGSMYVTASKDGAVRLWDGVSAKCLRSIVSAHGTAE 320
WD40-rpts _______________) (___________________WD 6__________________) (______________
Query 321 ATSAKFTKDERYVLSCGKDSTVKLWDVGTGKLVKQYVGATHMQLRCQAAFNDNEEFVLSIDEPSNEIVIWDALTAERVAR 400
WD40-rpts ____WD 7_________________) (_______________
Query 401 WPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL 437
WD40-rpts _______WD 8______________________)
 8 WD40-repeats found in QUERY=CmaCh13G010630 (Len=437): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 41-69 3.33 252.11 0.02465 7.5% 35.81 WD 2: Seg 4 73-110 6.34 376.68 0.00052 20.0% 30.08 WD 3: Seg 7 118-156 9.17 493.39 1.4e-05 32.5% 53.83 WD 4: Seg 11 174-212 8.77 476.81 2.3e-05 32.5% 53.07 WD 5: Seg 15 218-256 8.33 458.59 4.1e-05 22.5% 56.96 WD 6: Seg 19 260-302 8.67 472.73 2.6e-05 27.5% 57.26 WD 7: Seg 23 306-346 8.75 476.23 2.4e-05 35.0% 57.12 WD 8: Seg 30 385-434 7.91 441.47 7.0e-05 22.5% 51.41Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 41-69 ---------------------------ASRTPLNVDVPPNKLMELVAKGLAVEKEE WD 2 73-110 -GSPA----------SALY----EF--GSSVPST-FGSTQPSRASAIDFSTVQDTK WD 3 118-156 -KHET----------RHLS----EH--KNVARCARFSADGRFVATGSADMSIKLFE WD 4 174-212 -RPVI----------RTFY----DH--IQPINDLDFHPQNTVLISGAKDQTIKFFD WD 5 218-256 -AKKA----------FRVI----QD--THNVRSISLHPSGDYLLAGTDHPIAHLYD WD 6 260-302 -FQCF----------LSANVPEIGN--SGAINQVRYSATGSMYVTASKDGAVRLWD WD 7 306-346 -AKCL----------RSIV----SAHGTAEATSAKFTKDERYVLSCGKDSTVKLWD WD 8 385-434 NEIVIWDALTAERVARWPS----NH--IGPPRWLEHSPTESAFISCGTDKSIRFWK WD40 Template TGECL----------RTLS----GH--TSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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