WDRR: WD40 Repeat Recognition
[HOME]   [JOB LIST]   [PRE-CALCULATED RESULTS]   [VISITORS]   [ABOUT]
JobID: L27ZL1659503173    Submitted: 2022-08-03 13:06:13

You can bookmark this page for further accessing the result in the future.
Results on this server will be retained for 30 days.

Job status:  [Done] Total run time: 79748157 seconds.    [Download result as txt]    [Query sequence in FASTA]
Input parameters: 
  Query = CmaCh14G016150 (Len=1403)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3
Query sequence (CmaCh14G016150, Len=1403): 
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSNTPNDMSRSHFDVSRIAIVQHSLLSSNWVLIINANLWIQDGSVLDSRSHDAKSKCSFCVLHETAMSISCMATAFSSSP 80  
WD40-rpts                                                                                      

Query       81 TQCPPPVCENARLDLNSIRGLVVSINQYIHEFLSNAEARTSVKLRCISKLRNHKHEYFEFLEQSIISNLYWGVENIEDTV 160 
WD40-rpts                                                                                      

Query      161 QTSSSEVRATKLQTAEQMLQVPALLDEHGETSGMDNRYLVCCSYFYLSLVKNLQGDEWQVALHFLQSLLVSPRLVLTEFA 240 
WD40-rpts                                                                                      

Query      241 QEFCYSLLLSFATCSRQENCTSMRSNSCVEFGEGDFGESTVRQVARKYKDWLMYYQVMSYGETHQWQQQGSSSMFSSEDG 320 
WD40-rpts                                                                                      

Query      321 SHSLHGSFSRIEDSKAIDCGLAKPTVSHYDIISPLDHIDAFQDKINTSQDVPRCEELGNSEKNLGLIPEPQLNDGGFWRD 400 
WD40-rpts                                                                                      

Query      401 SSTKFIGDMLKDSHLGSPTSLFSSMNDSESDSDFEAGMNYTNHSKRSAQEDVPENFYQKLRYARSKSDTEQSLISLTSAS 480 
WD40-rpts                                                                                      

Query      481 LSRVQEHYIEANMMKSISNKFNDYKLCSEEQKDLEPQILQNCLEDSEPKELFVNPCKLQTFDSALPLALGQGSTCQISKQ 560 
WD40-rpts                                                                                      

Query      561 NSAKGQLYHANSRKDSKSEILGLVEKAISRLCFSEGLGNYDDEYAVEVSTVYKMLNNKTGVQYTMLKDLIMDQLVTGIST 640 
WD40-rpts                                                                                      

Query      641 SKEEKVIRASVSLLTTIISENNSVIEDIKKKGLQLCDLATALKQNVHEAAILIYLISPSPREIKSLELLPVLVEIISTSR 720 
WD40-rpts                                                                                      

Query      721 CYNTWSPPLMLTPPAASMMIIEVMVTAFDEDTNKMHLVEISSPSVLCGLLEVARTNNVEGLVSLGSILVKCMQLDGECRS 800 
WD40-rpts                                                                                      

Query      801 YISKFISVAPFLCLLQSDKKEAVHITLQVFNEILRVPRSSAISLLQRIKNEGGNDIIHILMLCVDHLQTEYQLLAANLLI 880 
WD40-rpts                                                                                      

Query      881 QLLVLDNGSTTSFLKEEAVHVLLRSVACEETSAMQLLSASILSTLGGTFAWTGEPYTVAWLLKKVGLSSDHQNMIKSFNW 960 
WD40-rpts                                                                                      

Query      961 LDQSLQDAGMDSWCSLMARNIICIGEPVFHALEKGLKSNIKKVSRDCLTTIAWLGCEIAKSPSSIRCSACEILLSRIELF 1040
WD40-rpts                                                                                      

Query     1041 LHPGVELEERLLACLCIFNYTSGKGMQNLTNFSEGVRESLRRLSHITWMAEELHQVADYLMPNNSRISCVHTQVLELGFN 1120
WD40-rpts                                                                                   (__

Query     1121 SSGAVCALIFYKGLLFGGYSDGSIKVWNIKGQSASLLWDIKKHRKAVTCFSHFESGESLLSGSSDKTIRVWKMIQGRLEC 1200
WD40-rpts      ___________WD 1____________)     (_________________WD 2________________)(_______

Query     1201 IEVIESKEQIQHVGAYGQIIFAITHGHGLKMIDASRTTKVLFKSKNLKCMKVVQARVYAGCTDSSIQEFSVTNKWEQEIK 1280
WD40-rpts      ___________WD 3_________________)(________________WD 4_______________)          

Query     1281 SPSKSWMMMHHKAINSLAVYKDWLFCASSIVQGSLFQNWRRHEKPKMNIVTSKGDVVQAISVVEDFVYIICKSSLSSIQI 1360
WD40-rpts      (_________________WD 5_________________)   (_________________WD 6_______________

Query     1361 WLRKAQLKVGRVSASSRITCLLTANDMVLCGTETGKIKGWIPI 1403
WD40-rpts      _)  (________________WD 7_______________)


7 WD40-repeats found in QUERY=CmaCh14G016150 (Len=1403):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 10  1118-1148     4.76  311.40  0.00395       25.0%     44.80
  WD 2:  Seg 13  1154-1192     9.16  492.85  1.4e-05       37.5%     52.96
  WD 3:  Seg 17  1193-1233     5.06  323.81  0.00269       12.5%     55.12
  WD 4:  Seg 21  1234-1270     3.29  250.54  0.02587       15.0%     29.86
  WD 5:  Seg 25  1281-1320     5.00  321.00  0.00294       15.0%     43.95
  WD 6:  Seg 28  1324-1362     6.76  393.71  0.00031       15.0%     55.62
  WD 7:  Seg 32  1365-1401     4.95  319.26  0.00310       22.5%     50.78
Multiple sequence alignment of 7 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1 1118-1148   --------GFNSSGAVCALIFYKG--LLFGGYSDG-SIKVWN
   WD 2 1154-1192   -AS-LLWDIKKHRKAVTCFSHFESGESLLSGSSDK-TIRVWK
   WD 3 1193-1233   MIQGRLECIEVIESKEQIQHVGAYGQIIFAITHGH-GLKMID
   WD 4 1234-1270   ----ASRTTKVLFKSKNLKCMKVVQARVYAGCTDS-SIQEFS
   WD 5 1281-1320   -SP-SKSWMMMHHKAINSLAVYKDWLFCASSIVQGSLFQNWR
   WD 6 1324-1362   -KP-KMNIVTSKGDVVQAISVVEDFVYIICKSSLS-SIQIWL
   WD 7 1365-1401   -AQ-LKVGRVSASSRITCLLTAND--MVLCGTETG-KIKGWI

   WD40 Template    TGE-CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDG-TIKVWD
Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University
Powered and maintained by Chuan Wang
Last modified: 09 Jan 2019