WDRR: WD40 Repeat Recognition
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| JobID: L0WK11476209903 Submitted: 2016-10-12 02:18:23 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 262920740 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = sp_Q9C0C7_AMRA1_HUMAN (Len=1298) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (sp_Q9C0C7_AMRA1_HUMAN, Len=1298): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MKVVPEKNAVRILWGRERGARAMGAQRLLQELVEDKTRWMKWEGKRVELPDSPRSTFLLAFSPDRTLLASTHVNHNIYIT 80
WD40-rpts (_________________WD 1________________
Query 81 EVKTGKCVHSLIGHRRTPWCVTFHPTISGLIASGCLDGEVRIWDLHGGSESWFTDSNNAIASLAFHPTAQLLLIATANEI 160
WD40-rpts ) (_________________WD 2_________________) (________________WD 3_____________
Query 161 HFWDWSRREPFAVVKTASEMERVRLVRFDPLGHYLLTAIVNPSNQQGDDEPEIPIDGTELSHYRQRALLQSQPVRRTPLL 240
WD40-rpts ___)(___________________WD 4___________________)
Query 241 HNFLHMLSSRSSGIQVGEQSTVQDSATPSPPPPPPQPSTERPRTSAYIRLRQRVSYPTAECCQHLGILCLCSRCSGTRVP 320
WD40-rpts (__________________WD 5__________________)
Query 321 SLLPHQDSVPPASARATTPSFSFVQTEPFHPPEQASSTQQDQGLLNRPSAFSTVQSSTAGNTLRNLSLGPTRRSLGGPLS 400
WD40-rpts
Query 401 SHPSRYHREIAPGLTGSEWTRTVLSLNSRSEAESMPPPRTSASSVSLLSVLRQQEGGSQASVYTSATEGRGFPASGLATE 480
WD40-rpts
Query 481 SDGGNGSSQNNSGSIRHELQCDLRRFFLEYDRLQELDQSLSGEAPQTQQAQEMLNNNIESERPGPSHQPTPHSSENNSNL 560
WD40-rpts
Query 561 SRGHLNRCRACHNLLTFNNDTLRWERTTPNYSSGEASSSWQVPSSFESVPSSGSQLPPLERTEGQTPSSSRLELSSSASP 640
WD40-rpts
Query 641 QEERTVGVAFNQETGHWERIYTQSSRSGTVSQEALHQDMPEESSEEDSLRRRLLESSLISLSRYDGAGSREHPIYPDPAR 720
WD40-rpts
Query 721 LSPAAYYAQRMIQYLSRRDSIRQRSMRYQQNRLRSSTSSSSSDNQGPSVEGTDLEFEDFEDNGDRSRHRAPRNARMSAPS 800
WD40-rpts
Query 801 LGRFVPRRFLLPEYLPYAGIFHERGQPGLATHSSVNRVLAGAVIGDGQSAVASNIANTTYRLQWWDFTKFDLPEISNASV 880
WD40-rpts
Query 881 NVLVQNCKIYNDASCDISADGQLLAAFIPSSQRGFPDEGILAVYSLAPHNLGEMLYTKRFGPNAISVSLSPMGRYVMVGL 960
WD40-rpts
Query 961 ASRRILLHPSTEHMVAQVFRLQQAHGGETSMRRVFNVLYPMPADQRRHVSINSARWLPEPGLGLAYGTNKGDLVICRPEA 1040
WD40-rpts
Query 1041 LNSGVEYYWDQLNETVFTVHSNSRSSERPGTSRATWRTDRDMGLMNAIGLQPRNPATSVTSQGTQTLALQLQNAETQTER 1120
WD40-rpts
Query 1121 EVPEPGTAASGPGEGEGSEYGASGEDALSRIQRLMAEGGMTAVVQREQSTTMASMGGFGNNIIVSHRIHRSSQTGTEPGA 1200
WD40-rpts
Query 1201 AHTSSPQPSTSRGLLPEAGQLAERGLSPRTASWDQPGTPGREPTQPTLPSSSPVPIPVSLPSAEGPTLHCELTNNNHLLD 1280
WD40-rpts
Query 1281 GGSSRGDAAGPRGEPRNR 1298
WD40-rpts
 5 WD40-repeats found in QUERY=sp_Q9C0C7_AMRA1_HUMAN (Len=1298): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 5 43-81 7.10 408.04 0.00020 22.5% 52.36 WD 2: Seg 9 85-124 8.00 445.05 6.2e-05 35.0% 53.44 WD 3: Seg 13 127-164 5.84 355.79 0.00100 20.0% 50.47 WD 4: Seg 17 165-208 5.37 336.48 0.00182 17.5% 56.20 WD 5: Seg 24 251-292 4.82 313.74 0.00368 10.0% 22.25Multiple sequence alignment of 5 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 43-81 EG--K----RV-ELPDSPRSTFLLAFSPD-RTLLASTHVNHNIYITE WD 2 85-124 -G--K----CVHSLIGHRRTPWCVTFHPTISGLIASGCLDGEVRIWD WD 3 127-164 -G--G----SESWFTDSNNAIASLAFHPT-AQLLLIATAN-EIHFWD WD 4 165-208 WS--RREPFAVVKTASEMERVRLVRFDPL-GHYLLTAIVNPSNQQGD WD 5 251-292 SSGIQ----VGEQSTVQDSATPSPPPPPP-QPSTERPRTSAYIRLRQ WD40 Template TG--E----CLRTLSGHTSGVTSVSFSPD-GKRLVSGSEDGTIKVWD |
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