Input parameters:

  Query = CmaCh01G001180 (Len=938)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh01G001180, Len=938):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPLRLAIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPVRSAKFIARKQWVVAGADDML 80  
WD40-rpts         (_________________WD 1_________________)   (_________________WD 2____________

Query       81 IRVYNYNTMDKIKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWDKGWVCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 
WD40-rpts      ____)   (_________________WD 3________________)(___________________WD 4_________

Query      161 ASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPD 240 
WD40-rpts      __________)(___________________WD 5___________________)   (_________________WD 6

Query      241 LPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAIGYMKSSRRVVIGYDEGTIMIKLGREEPIASMDNSGKIVWAKHN 320 
WD40-rpts      ________________)   (_________________WD 7________________)  (_________________W

Query      321 EIQTVNIKSVGADFEVTDGERLPLAVKEMGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSAD 400 
WD40-rpts      D 8________________)  (________________WD 9________________)                    

Query      401 GEYAVRESTSKIKIFSKNFQEKKSIRPTFSAEHIYGGTLLAMCSNDFICFYDWAECRLIRRIDVKVKNVYWADSGDLVAI 480 
WD40-rpts                                                          (________________WD10_______

Query      481 ASDTSFYILKYNRDAVSSCLDSGRPVDEQGVEDAFELLHEVNERVRTGLWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDR 560 
WD40-rpts      _________)  (_________________WD11________________)                             

Query      561 PMYLLGYLASQSRVYLIDKEFNVVGYTLLLSLIEYKTLVMRGDYERANEVLPSIPKEHRNSVARFLESRGMIEEALEVAT 640 
WD40-rpts                                                                                      

Query      641 DLDYRFDLAIQLGRLEIAKEIAVEVQSESKWKQLGELAMSIGKLDMAEECLKYAVDFSGLLLLYSSLGDAQGITQLATLA 720 
WD40-rpts                                                                                      

Query      721 KEQGKNNVAFLCLFMLGRLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLNKVNPKAAESLADPEEYPNLFD 800 
WD40-rpts                                                                                      

Query      801 DWQVALSVESRARQDRGVFTSAEEYATLADKPYNTLVEAFRSMQIEGHLENGDIDHEDTEQNGDEQDEHIAEHSGDEQDK 880 
WD40-rpts                                                                                      

Query      881 HVAEHSGDGQDKHIAEHNGDESQEEGEGIVVDADSTDGAVLVNGSEGDEEWGTNTPSA 938 
WD40-rpts                                                                

11 WD40-repeats found in QUERY=CmaCh01G001180 (Len=938):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-43       6.07  365.38  0.00074       22.5%     53.23
  WD 2:  Seg  5    47-85       6.69  391.17  0.00033       20.0%     56.55
  WD 3:  Seg  9    89-127      8.13  450.37  5.3e-05       27.5%     56.51
  WD 4:  Seg 13   128-171      7.78  436.13  8.2e-05       37.5%     55.59
  WD 5:  Seg 17   172-215      8.03  446.39  6.0e-05       42.5%     51.74
  WD 6:  Seg 21   219-257     10.03  529.04  4.6e-06       45.0%     56.32
  WD 7:  Seg 25   261-299      5.61  346.56  0.00133       22.5%     54.61
  WD 8:  Seg 29   302-340      3.92  276.53  0.01163       10.0%     35.02
  WD 9:  Seg 33   343-380      3.43  256.17  0.02177       15.0%     51.19
  WD10:  Seg 44   453-490      2.88  233.70  0.04324       20.0%     42.19
  WD11:  Seg 47   493-531      3.56  261.91  0.01825       10.0%     27.96

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    4-43     RL--A---IKRKLAQRSERVKSVDLHP-TEPW--ILASLYSGTVCIWN
   WD 2   47-85     -Q--I---MVKSFEVTELPVRSAKFIA-RKQW--VVAGADDMLIRVYN
   WD 3   89-127    -M--D---KIKVFEAHTDYIRCVAVHP-TLPY--VLSSSDDMLIKLWD
   WD 4  128-171    WD--KGWVCTQIFEGHSHYVMQVTFNPKDTNT--FASASLDRTIKIWN
   WD 5  172-215    LGSPD---PNFTLDAHQKGVNCVDYFT-GGDKPYLITGSDDHTAKVWD
   WD 6  219-257    -K--S---CVQTLDGHTHNVSAVCFHP-DLPI--IITGSEDGTVRIWH
   WD 7  261-299    -Y--R---LENTLNYGLERVWAIGYMK-SSRR--VVIGYDEGTIMIKL
   WD 8  302-340    -E--E---PIASMDNSGKIVWAKHNEI-QTVN--IKSVGADFEVTDGE
   WD 9  343-380    -P--L---AVKEMGTCDLYPQSLKHNP-NGRF--VVVCG-DGEYIIYT
   WD10  453-490    WA--E---C-RLIRRIDVKVKNVYWAD-SGDL--VAIAS-DTSFYILK
   WD11  493-531    -R--D---AVSSCLDSGRPVDEQGVED-AFEL--LHEVNERVRTGLWV

   WD40 Template    TG--E---CLRTLSGHTSGVTSVSFSP-DGKR--LVSGSEDGTIKVWD