Input parameters:

  Query = CmaCh08G002550 (Len=1341)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh08G002550, Len=1341):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLRLRAFRPSNEKIVKIQMHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGIDQRRLVGAKLEKLAEGEFDSKGKPTE 80  
WD40-rpts      (_________________WD 1________________)                                         

Query       81 AIRGGSVKQVSFYDDDVRFWQLWRNRSVAAEAPSAVNQVTSALSSPAPSTKGRHFLVICCENKAIFLDLVTMRGRDVPKQ 160 
WD40-rpts                                   (_________________WD 2________________)      (_____

Query      161 DLDNKSLLCMEFLSKSSGADGPLVAFGGSDGVIRVLSMLTWKLVRRYTGGHKGSISCLMTFIASSGEALLVSGASDGLLV 240 
WD40-rpts      ______________WD 3__________________)(____________________WD 4__________________

Query      241 LWSADNSQDSRELVPKLSLKAHDGGVVAVELSRVIGGSPQLITIGADKTLALWDTISFKELRRIKPVPKLACHSVASWCH 320 
WD40-rpts      __)(_______________________WD 5______________________)                          

Query      321 PRAPNLDILTCVKDSHIWAIEHPTYSALTRPLCELSSLVPPQVLAPNKKVRVYCMIAHPLQPHLVATGTNIGVIISELDA 400 
WD40-rpts                                                                                      

Query      401 RSLPAVAPLPTPSGSQEHAAVYIVERELKLLNFQLSHTTNPSLGNNGSLSEGGRLKGDEVLQVKQVKKHISTPVPHDAYS 480 
WD40-rpts                               (________________WD 6________________) (_______________

Query      481 VLSVSSSGKYLAIIWPDIPYFSIYKVSDWSIVDSGSARLLAWDTCRDRFALLESAVPPRFPVIPKGGSSRKAKEAAAAAA 560 
WD40-rpts      ___WD 7_________________)                                                       

Query      561 QAAAAAASAASSASVQVRILLDDGTSNILMRSIGSRNEPVVGLHGGALLGVAYRTSRRISPVAATAISTMPLSGFGNSGV 640 
WD40-rpts                                                                                      

Query      641 SSFTSFDDGFSSHKSSAETTPPNFQLYSWETFQPVGALLPQPEWTAWDQTVEYCALAYQHYIVISSLRPQYRYLGDVAIP 720 
WD40-rpts                                                                                      

Query      721 YATGAVWHRRQLFVATPTTIECVFVDAGVAPIDIETKRMKDEMKLKEAQAKAIAEHGDLALITVDGPQTVNQERITLRPP 800 
WD40-rpts                                                                                      

Query      801 MLQVVRLASFQQAPSVPPFLSLPKQSKVDSDDSMMQKEFEERRANEIAVGGGGVSVAVTRFPAEQKRPVGPLVVVGVRDG 880 
WD40-rpts                                                 (______________________WD 8__________

Query      881 VLWLIDRYMSAHALSLNHPGIRCRCLAAYGDAVSAVKWASRLGREHHDDLAQFMLGMGYATEALHLHGISKRLEFDLAMQ 960 
WD40-rpts      ____________)                                                                   

Query      961 GNDLKRALQCLLTMSNSRDMGQDNTGLDLNDILSLTTKKEDIVETFQGITKFAKEFLDLIDAADATGQADIAREALKRLA 1040
WD40-rpts                                                                                      

Query     1041 AAGSLKGALQGHELRGLALRLANHGELTRLSGLVNNLISIGSGREAAFAAAVLGDNALMEKAWQDTGMLAEAVLHAHAHG 1120
WD40-rpts                                                                                      

Query     1121 RPTLKNLVESWNKMLQKELAHTVSEKTDATAAFFASLEEPKLTSLADAGKKPAIEILPPGMPTLSSSILAPKKPTPGAQG 1200
WD40-rpts                                                                                      

Query     1201 ALQQPAKPLLLEAPPANPQPPPDGTPNQSELSEQVLDGKAPTSTTGTDTSPTTPAENVPTTSNGSEPSDVQLSSFNTTLV 1280
WD40-rpts                                                                                      

Query     1281 ETQIPSSVTNTEHSEAVVEAAEIQNSSVHNSSSTNDAALPSEAPSEMPELQNTSLPNVSQF 1341
WD40-rpts                                                                   

8 WD40-repeats found in QUERY=CmaCh08G002550 (Len=1341):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-39       6.13  367.92  0.00068       17.5%     54.66
  WD 2:  Seg 11   110-148      4.47  299.37  0.00574       17.5%     26.40
  WD 3:  Seg 14   155-197      5.54  343.55  0.00146       27.5%     37.22
  WD 4:  Seg 17   198-243      5.88  357.50  0.00095       27.5%     49.09
  WD 5:  Seg 21   244-294      6.09  366.23  0.00072       27.5%     46.80
  WD 6:  Seg 33   426-463      4.29  292.01  0.00721       20.0%     28.09
  WD 7:  Seg 36   465-505      4.36  294.80  0.00661       15.0%     54.51
  WD 8:  Seg 53   844-893      4.27  290.94  0.00745       27.5%     29.57

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-39     MLR---------LRAF---RPSNEKIVKI---Q---MHP---THPWLVTADAS-DHVSVWN-------
   WD 2  110-148    -AE--------APSAV---NQVTSALSSP---A---PST---KGRHFLVICCE-NKAIFLD-------
   WD 3  155-197    RDV--------PKQDLDNKSLLCMEFLSK---S---SGA---DGPLVAFGGSD-GVIRVLS-------
   WD 4  198-243    MLT-----WKLVRRYT---GGHKGSISCL---MTFIASS---GEALLVSGASD-GLLVLWS-------
   WD 5  244-294    ADNSQDSRELVPKLSL---KAHDGGVVAV---E---LSRVIGGSPQLITIGAD-KTLALWD-------
   WD 6  426-463    RE----------LKLL---NFQLSHTTNP---S---LGN---NGSLSEGGRLK-GDEVLQV-------
   WD 7  465-505    QVK--------KHIST---PVPHDAYSVL---S---VSS---SGKYLAIIWPDIPYFSIYK-------
   WD 8  844-893    ANE--------IAVGG---GGVSVAVTRFPAEQ---KRP---VGPLVVVGVRD-GVLWLIDRYMSAHA

   WD40 Template    TGE--------CLRTL---SGHTSGVTSV---S---FSP---DGKRLVSGSED-GTIKVWD-------