Input parameters:

  Query = CsaV3_6G002750 (Len=392)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_6G002750, Len=392):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSISGSHEEEDDHGEVFLDEADIIHEVPVDEEDLPDAVDEEGSDDEYFDEADDSVHTFTGHTGEVYTVVCSPVDATLVAT 80  
WD40-rpts                     (______________WD 1______________)  (_________________WD 2_______

Query       81 GGGDDKGFMWKIGRGDFAQELSGHKDSVSSLAFSADGQLLASGSFDGIIQIWDTSSGNLKCTLEGPGGGIEWVRWHPRGH 160 
WD40-rpts      __________)   (_________________WD 3________________)   (_________________WD 4__

Query      161 LVLAGSEDSTAWMWNADRGIYLNIFSGHGASVTCGDFTPDGKIICTGSDDATMRIWNPRSGENIHVVRGHPYHTEGLTSL 240 
WD40-rpts      ______________)   (_________________WD 5________________)   (__________________W

Query      241 ALTSDSTLALTGSKDGSVHIVNIATGKVVNSLVSHSDSIECIGLAPSSPWAATGGMDQKLIIWDLQQSTPRSTCQHEDGV 320 
WD40-rpts      D 6__________________)   (_________________WD 7________________)(_______________

Query      321 TCLTWIGTSRYLATGCVDGRVRIWDSLSGECVKTFSGHSDAIQSLAVCANLEYLVSVALDNTARIFEIAEYH 392 
WD40-rpts      ___WD 8_________________)   (_________________WD 9________________)     

9 WD40-repeats found in QUERY=CsaV3_6G002750 (Len=392):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    16-49       5.82  355.19  0.00102        7.5%     37.02
  WD 2:  Seg  4    52-91       8.30  457.39  4.3e-05       30.0%     54.90
  WD 3:  Seg  8    95-133     10.79  560.23  1.7e-06       50.0%     56.73
  WD 4:  Seg 12   137-175      9.85  521.61  5.8e-06       35.0%     57.46
  WD 5:  Seg 16   179-217     10.57  551.15  2.3e-06       42.5%     57.02
  WD 6:  Seg 20   221-262      8.61  470.29  2.9e-05       32.5%     57.93
  WD 7:  Seg 24   266-304      9.40  502.93  1.0e-05       20.0%     57.82
  WD 8:  Seg 28   305-345      8.53  466.84  3.2e-05       27.5%     57.72
  WD 9:  Seg 32   349-387      9.90  523.43  5.5e-06       32.5%     57.28

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   16-49     -------VFLDE---ADIIHEVPVDE-EDLPDAVDEEGSDDEYFD
   WD 2   52-91     -DD-SVHTFTGH---TGEVYTVVCSPVDATLVATGGGDDKGFMWK
   WD 3   95-133    -GD-FAQELSGH---KDSVSSLAFSA-DGQLLASGSFDGIIQIWD
   WD 4  137-175    -GN-LKCTLEGP---GGGIEWVRWHP-RGHLVLAGSEDSTAWMWN
   WD 5  179-217    -GI-YLNIFSGH---GASVTCGDFTP-DGKIICTGSDDATMRIWN
   WD 6  221-262    -GE-NIHVVRGHPYHTEGLTSLALTS-DSTLALTGSKDGSVHIVN
   WD 7  266-304    -GK-VVNSLVSH---SDSIECIGLAP-SSPWAATGGMDQKLIIWD
   WD 8  305-345    LQQSTPRSTCQH---EDGVTCLTWIG-TSRYLATGCVDGRVRIWD
   WD 9  349-387    -GE-CVKTFSGH---SDAIQSLAVCA-NLEYLVSVALDNTARIFE

   WD40 Template    TGE-CLRTLSGH---TSGVTSVSFSP-DGKRLVSGSEDGTIKVWD