Input parameters:

  Query = CmaCh06G015590 (Len=1200)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh06G015590, Len=1200):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 HSLVISEVEDAVVHRGVFDGDFLLTPLKVRGWRIAIQIYYPEKPTLALESTERCSTEALNSKHSLVISEVEDAVVHRGVF 80  
WD40-rpts                                                                                      

Query       81 DGDLLLTPLKPCYTIAALVSVLLSSRALDWLGSFGRELEDMAREGQFFLTHSSSMTNMALRKFVYGDTPSINLKRSSLPI 160 
WD40-rpts                                                                                      

Query      161 KAHKTSEPDVEIDLREVYFLIMHFLSSGPCHRTCGLLWDELFEHQLLPRRYHAWFSRNGMQSGHENDDGSSFPLKYQHLV 240 
WD40-rpts                                                                                      

Query      241 ERYSHVDKDHLIKLLKQLMLSKASPSGGMNGAIAPNAADVPTLLGTGTFSLLSYDKNEGASKPSGPPAHMRWPHMKADSV 320 
WD40-rpts                                                                                      

Query      321 RGLSLREIGGGFSRHQRAPSVRAACYAIAKPSTMVQKMQNIKRLRGHRNAVYCAIFDRMGRYVITGSDDRLVKIWSMDTA 400 
WD40-rpts                                           (_________________WD 1________________)   (

Query      401 YCLASCRGHEGDITDLAVSSNNAVVASSSNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRAAYQLLSISLFCVDRQM 480 
WD40-rpts      _________________WD 2________________)   (______________WD 3______________)(____

Query      481 MEHVGYGMLGALLRVLLCRSSDDGTCRIWDARSSSQSAPRIYVPRPLDSVTAAARNSVSSVSTLPQSHQIFCCAFNACGT 560 
WD40-rpts      ___________WD 4______________)                                 (_____________WD 

Query      561 IFVTGSSDTLARVWSAYKGNNDNPDQPNHEIDVLAGHENDVNYVQFSGCAVASRFTTTDIAKEDNVHKFKNSWFTYDNIV 640 
WD40-rpts      5_____________)            (________________WD 6_______________)(___________WD 7

Query      641 TCSRDGSAIIWVPRSRRSHGKVGRWTRAYHLKVPPPPMPPQPARGGPRQRILPTPRGVNMIIWSLDNRFVLAAIMDCRIC 720 
WD40-rpts      ___________)                                (_________________WD 8______________

Query      721 VWNASDGSLVHSLTGHTESTYVLDVHPSNPRIAMSAGYDGKTIVWDIWEGTPIRIYEISHFKLVDGKFSSDGTSIILSDD 800 
WD40-rpts      __)   (_________________WD 9_________________)   (_________________WD10_________

Query      801 VGQLYILSTGQGESQQDAKYDQFFLGDYRPLIQDPSGNVVDQVGEYYTKLNSLLTGGICKISFLTQVCLLLLQLILVYVF 880 
WD40-rpts      _______)(________________WD11_______________)          (_________________WD12___

Query      881 MQDLLSDSGMIPYPEPYQTAYQQRRLGAMGLEWRLSRTLSDCIPAKAFGCHGSGMASIFSKNFCWARLQSRPRLPIMQWI 960 
WD40-rpts      _____________)         (_________________WD13________________)                  

Query      961 GDQKMKYKATIPIQNIMSLKIILLVGSKEQSDDTDSEYNVPEDYSTGGEQRSLNSNCSTDPECSSEDTGIDDAPADGLRR 1040
WD40-rpts                                                                                      

Query     1041 SNRKKQKADMEVMTSSGRRVKRRNMDEYEGDIVRSSRSQKSKSGHKPSKKKSASKLLRPQRAAARNARNWISSFKGKSTD 1120
WD40-rpts                                                                                      

Query     1121 GEDEYNSGGDCSESESTLEDSDIESDEYKRSLQNRNKHSKGKEVFVDGIEETKSLDVPESRVDVGNRKKLILKFSLRNRS 1200
WD40-rpts                                                                                      

13 WD40-repeats found in QUERY=CmaCh06G015590 (Len=1200):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 10   358-396      9.26  497.33  1.2e-05       27.5%     55.64
  WD 2:  Seg 14   400-438      9.35  500.82  1.1e-05       30.0%     57.14
  WD 3:  Seg 18   442-475      5.26  332.13  0.00208       27.5%     39.08
  WD 4:  Seg 21   476-510      4.69  308.30  0.00435       20.0%     39.54
  WD 5:  Seg 25   544-575      6.69  391.18  0.00033       20.0%     48.27
  WD 6:  Seg 28   588-624      5.60  346.08  0.00135       25.0%     22.80
  WD 7:  Seg 30   625-652      3.48  258.54  0.02024       17.5%     24.47
  WD 8:  Seg 34   685-723      7.01  404.30  0.00022       22.5%     54.62
  WD 9:  Seg 38   727-766      8.18  452.42  5.0e-05       32.5%     57.43
  WD10:  Seg 42   770-808      7.57  427.41  0.00011       17.5%     52.15
  WD11:  Seg 46   809-845      3.65  265.62  0.01628       12.5%     14.09
  WD12:  Seg 51   856-894      5.18  328.53  0.00232        5.0%     14.28
  WD13:  Seg 53   904-942      4.02  280.67  0.01023       12.5%      0.12

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  358-396    -MQNIKRLRGHRNAVYCAIFDRMGRYV-ITGSDDRLVKIWS
   WD 2  400-438    -AYCLASCRGHEGDITDLAVSSNNAVV-ASSSNDFVIRVWR
   WD 3  442-475    -GLPISVLRGHTGAVTAIAFSPRA------AYQLLSISLFC
   WD 4  476-510    VDRQMMEHVGY-----GMLGALLRVLL-CRSSDDGTCRIWD
   WD 5  544-575    --------LPQSHQIFCCAFNACGTIF-VTGSSDTLARVWS
   WD 6  588-624    -NHEIDVLAGHENDVNYVQFSGCA--V-ASRFTTTDIAKED
   WD 7  625-652    ----------NVHKFKNSWFTYDN--I-VTCSRDGSAIIWV
   WD 8  685-723    -GGPRQRILPTPRGVNMIIWSLDNRFV-LAAIMDCRICVWN
   WD 9  727-766    -GSLVHSLTGHTESTYVLDVHPSNPRIAMSAGYDGKTIVWD
   WD10  770-808    -GTPIRIYEISHFKLVDGKFSSDGTSI-ILSDDVGQLYILS
   WD11  809-845    TGQGESQQDAKYDQFFLGDYRPLIQDP-SGNVVD---QVGE
   WD12  856-894    -GGICKISFLTQVCLLLLQLILVYVFM-QDLLSDSGMIPYP
   WD13  904-942    -RRLGAMGLEWRLSRTLSDCIPAKAFG-CHGSGMASIFSKN

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRL-VSGSEDGTIKVWD