WDRR: WD40 Repeat Recognition
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| JobID: KQB7X1659497830 Submitted: 2022-08-03 11:37:10 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79753407 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh10G003890 (Len=970) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh10G003890, Len=970): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MPINSESTPPPLIGKIGPYTVFMTPPATPSPASQPPPVFESPKKVIQPPPVQPPPQQYDESVPNGNASVAGFFRNAVSKV 80
WD40-rpts
Query 81 QNAHSSLDDHLARWLGLNQSKYQWALDDYYESKGLENGDIKAKEQLSKAQSVQQFIEMMECHKNMAVELPFYGRHQYSLR 160
WD40-rpts (__________________WD 1_________________)
Query 161 TMICGGKSYVSAPPAFSNDAKRLLVCTANSVSIFSTSTGLQITSLEGHKALVTSVTVVPASSQASKMLCFCWTTSLDGTI 240
WD40-rpts (_____________WD 2____________) (____________________WD 3_________________
Query 241 RYWDFSVPELMKTVDIQLPVHSMVIPSFLGQPLERDSKSRDLFAYVSVENIKVKDNKPVPTSAQILKCNLTKSRLAAGVI 320
WD40-rpts ___) (_________________WD 4________________) (__________
Query 321 LAETQQPEYITISSTGRFFGIWNKRKIHVWKVPEVESESVGAKRITLHHTKDLTVLAFHPIQRMVAAGDVTGRILIWRGF 400
WD40-rpts ________WD 5__________________)(_____________________WD 6____________________)(_
Query 401 GNRTFSVSGTETGKKYFEDEDKPGVRGNDDADSCSTWHWHPAEVIVLSFSFDGTYLYSGGKEGVLVVWQIDTEKRKYLPR 480
WD40-rpts ____________WD 7____________)(_________________WD 8_________________) (________
Query 481 IGSPLLYFTDSPDPLLASVSCADNQIHLLKMPSMEILKSISGIKLPCSFPDVCQGSNNGFSFDRNGGLVALRSENYSIQF 560
WD40-rpts _________WD 9________________) (______________________WD10____________________
Query 561 YSLYDDCGICEVQICERNHQPSEELTVVVTVVALSLDGSLMSTAEVRSPEDGIGGLICLKFWDSELENKRFSLSTVVYEP 640
WD40-rpts _) (______________________WD11______________________) (_____________
Query 641 HRDAGISALTFHPNRRMAVSTSYGGDFKIWVRNDGRQKIQGEQNSSWMCHSVGSYKKKSMNAATFSADGSVLAVAAETVI 720
WD40-rpts _______WD12___________________) (________________WD13_____________
Query 721 TLWDPEQNILIAVIGETLTPIVNLSFAGDSEFLISVSQGSRPQLSVWSMTKLSVSWSYKLHVEAVACAVDTSSFAVLALI 800
WD40-rpts ___) (__________________WD14_________________) (_________________WD15_______
Query 801 PESVRLQFNDSTFQGRDGVILHFNANDPVPQNTWSVRKAQGGGLAFLRSKKSSNSSDGKFDHPWLVYINGDHEYTLFDPS 880
WD40-rpts _________)
Query 881 GKEVQELSLTKQGSHHALEETGGKFGYQAIYGELPEFDSKVDQTLSAPSVPSQRPWETIFSGSSHELPPLSKLCSAFLES 960
WD40-rpts
Query 961 LLERRTVTSE 970
WD40-rpts
 15 WD40-repeats found in QUERY=CmaCh10G003890 (Len=970): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 5 113-153 2.90 234.40 0.04233 5.0% 7.92 WD 2: Seg 9 165-195 3.92 276.59 0.01161 17.5% 39.55 WD 3: Seg 13 199-244 7.82 437.50 7.9e-05 40.0% 55.69 WD 4: Seg 17 248-286 5.54 343.65 0.00145 17.5% 44.66 WD 5: Seg 22 310-351 5.86 356.63 0.00097 15.0% 48.91 WD 6: Seg 26 352-398 8.18 452.62 4.9e-05 27.5% 54.47 WD 7: Seg 30 399-429 5.78 353.56 0.00107 17.5% 34.37 WD 8: Seg 33 430-469 10.64 554.23 2.1e-06 35.0% 55.92 WD 9: Seg 36 472-510 6.88 398.68 0.00026 20.0% 52.13 WD10: Seg 40 514-562 6.49 382.90 0.00043 25.0% 55.14 WD11: Seg 45 574-623 6.07 365.33 0.00074 27.5% 40.90 WD12: Seg 48 627-671 6.81 396.14 0.00029 27.5% 56.52 WD13: Seg 53 687-724 6.76 393.92 0.00031 25.0% 53.03 WD14: Seg 57 728-768 7.20 412.25 0.00017 20.0% 59.44 WD15: Seg 61 772-810 7.02 404.77 0.00022 12.5% 43.60Multiple sequence alignment of 15 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 113-153 KGL-------ENGDIKA------KE----------QLSKAQSVQQFIEM-------MECHKNMAV---------E--LPFYG WD 2 165-195 ---------------GG------KS----------YVSAPPAFSNDAKR-------L-LVCTAN----------S--VSIFS WD 3 199-244 -GL-------QITSLEG------HK----------ALVTSVTVVPASSQASKMLCFC-WTTSLDG---------T--IRYWD WD 4 248-286 -PE-------LMKTVDI------QL----------PVHSMVIPSFLGQP-------L-ERDSKSR---------D--LFAYV WD 5 310-351 LTK----SRLAAGVILA------ET----------QQPEYITISSTGRF-------F-GIWN-KR---------K--IHVWK WD 6 352-398 VPEVESESVGAKRITLH------HT----------KDLTVLAFHPIQRM-------V-AAGDVTG---------R--ILIWR WD 7 399-429 ----------------G------FG----------NRTFSVSGTETGKK-------Y-FEDEDKP---------G--VRGND WD 8 430-469 DAD-------SCSTWHW------HP----------AEVIVLSFSFDGTY-------L-YSGGKEG---------V--LVVWQ WD 9 472-510 -TE-------KRKYLPR------IG----------SPLLYFTDSPDPLL-------A-SVSCADN---------Q--IHLLK WD10 514-562 -ME-------ILKSISG------IKLPCSFPDVCQGSNNGFSFDRNGGL-------V-ALRSENY---------S--IQFYS WD11 574-623 ICE------RNHQPSEE------LT----------VVVTVVALSLDGSL-------M-STAEVRSPEDGIGGLIC--LKFWD WD12 627-671 -EN-------KRFSLSTVVYEPHRD----------AGISALTFHPNRRM-------A-VSTSYGG---------D--FKIWV WD13 687-724 -WM-------CHSVGSY------KK----------KSMNAATFSADGSV-------L-AVAA-ET---------V--ITLWD WD14 728-768 -NI-------LIAVIGE------TL----------TPIVNLSFAGDSEF-------L-ISVSQGS---------RPQLSVWS WD15 772-810 -LS-------VSWSYKL------HV----------EAVACAVDTSSFAV-------L-ALIPESV---------R--LQFND WD40 Template TGE-------CLRTLSG------HT----------SGVTSVSFSPDGKR-------L-VSGSEDG---------T--IKVWD |
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