WDRR: WD40 Repeat Recognition
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| JobID: KO4UR1659460960 Submitted: 2022-08-03 01:22:40 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79789490 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh04G011090 (Len=1139) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh04G011090, Len=1139): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MFSKFFHKPVDQQSSSTSAHSPRAQKGVLGAADLDPRVTLHYGIPPAASILAYDPIQSLLAVGTLDGRIKVFGGDSIEAI 80
WD40-rpts (__________________________________WD 1_________________________________)_______
Query 81 FTSPKPLPFKNLEFLHNQGFLVSISNDNEIQVWELELRQLVSTLRWESNITAFSVLHGTCYMYVGSEYAMVAVLKFDAEE 160
WD40-rpts ___________WD 2__________________) (_________________WD 3________________)
Query 161 RKIKLLPYYLTSNVISEVTGVELPDQTSVVGVLLQPCSLGNRQENILTLPLVSPVLIAYENGLLVLWDASEDRAVLVRGH 240
WD40-rpts
Query 241 KDLGLTESNITNHSTDVSDLELEKEISSLCWVTNDGSILAVGYVDGDILFWNFSNVTSSKDQQVNQSRNNAVKLQLSSGN 320
WD40-rpts (_________________WD 4_________________)
Query 321 KRLPVILLRWSPSELQNHKGELFVYGGDEIGSPELLTILSLDWSSGMKSLKCMERVDLTLDGSFADIILSPNVGETKRGT 400
WD40-rpts (_______________WD 5_______________) (________________
Query 401 FLFVLANPGQLHAYDNAYLSSIMSQQKKISSGSGLQYPMVIPNIEPRVMVAKLGFIHREKTVFRALNELKIAKHRTQVPR 480
WD40-rpts _WD 6________________) (______________________
Query 481 DTTWPLTGGIPCQLHDAEDYQVERVYIAGYQDGSIRIWDATYPSFSRIFSFEPEVIGLNIAGLSASISALDFCSVTLSVA 560
WD40-rpts ______WD 7____________________________) (______________WD 8__
Query 561 VGNDCGLVRLYKLIGSSEGASLHYVTETKNEVHNMHGGEGIQCVAVFSVVNSSVSTLSFENCGAVLAVGFECGQVAVFDT 640
WD40-rpts ___________) (_________________WD 9________________)
Query 641 NTLSLLYLTNDVSNSRSPVISLAIKSFPDTNHLEASSDESIPPRKGILLAMTKNSYLAVLDSTNGEIISFQSTYAKESSS 720
WD40-rpts (_______________WD10______________)
Query 721 ISMYIIESDYLSPEALSVAHAPSTPKITGESYSVPANAHSGRTLHEVGADTSSGIANLFILLCCETALYLHPLKHMNEGE 800
WD40-rpts (_______
Query 801 NKFLQKVTLSKPCCWTTMLKKDGKVSGLVVLYQNGVIEISLSNGTLVVLIVRCKLLPSLSRSFQNLEQVVWESSLTSILR 880
WD40-rpts _______________WD11_____________________) (_________________WD12______________
Query 881 WSFKTNMEKTICSSDDGQIMLLNGTEFAVVSLLIYENAFRIPESFPSLHDEVLAAATEASNNFYPSQNKQDATVSGFLDS 960
WD40-rpts __)
Query 961 VVKGFKGGKAENDVDPLSLCKLNDSHLESLFSYPPFLKPSKGVTDELGVIELDIDDIEIDEPLVVRFSPKKSKNEKEGIS 1040
WD40-rpts
Query 1041 TLICWYFLDLYYILRLYFDVDEGKRSEKEKLFEGGSTNSQPKMRTAEEIKAKYRKAESASTAAEEARNKLLERQQKLDLY 1120
WD40-rpts
Query 1121 PTAKLVRMITTIELLRCKL 1139
WD40-rpts
 12 WD40-repeats found in QUERY=CmaCh04G011090 (Len=1139): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 1-73 3.39 254.61 0.02283 22.5% 47.16 WD 2: Seg 4 73-114 6.10 366.55 0.00071 27.5% 53.70 WD 3: Seg 8 117-155 4.81 313.27 0.00373 20.0% 56.52 WD 4: Seg 19 253-292 4.64 306.49 0.00460 22.5% 44.72 WD 5: Seg 24 346-381 4.03 281.24 0.01005 12.5% 31.41 WD 6: Seg 27 384-422 3.89 275.41 0.01203 2.5% 27.04 WD 7: Seg 32 458-519 6.48 382.17 0.00044 15.0% 43.23 WD 8: Seg 37 540-572 5.67 348.83 0.00124 10.0% 46.23 WD 9: Seg 41 601-639 7.66 431.17 9.6e-05 32.5% 56.00 WD10: Seg 47 667-701 5.00 321.16 0.00292 15.0% 28.14 WD11: Seg 53 793-841 3.11 243.32 0.03226 20.0% 37.10 WD12: Seg 56 845-883 3.00 238.51 0.03736 10.0% 18.40Multiple sequence alignment of 12 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1-73 MFSKFFHKPVDQQSSSTSAHSPRAQKGVLGAADLDPRVT---------LH--YG----------------------IPPAASILAY-DPIQSLLAVGTLDGRIKVFG WD 2 73-114 GGD---------------------------------SIE---------AIFTSP----------------------KPLPFKNLEF-LHNQGFLVSISNDNEIQVWE WD 3 117-155 -LR---------------------------------QLV---------ST--LR----------------------WESNITAFSV-LHGTCYMYVGSEYAMVAVLK WD 4 253-292 -HS---------------------------------TDV---------SD--LE----------------------LEKEISSLCWVTNDGSILAVGYVDGDILFWN WD 5 346-381 GGD----------------------------------------------E--IG----------------------SPELLTILSL-DWSSGMKSLKCMERVDLTLD WD 6 384-422 -FA---------------------------------DII---------LS--PN----------------------VGETKRGTFL-FVLANPGQLHAYDNAYLSSI WD 7 458-519 REK---------------------------------TVF---------RA--LNELKIAKHRTQVPRDTTWPLTGGIPCQLHDAED-YQVERVYIAGYQDGSIRIWD WD 8 540-572 -------------------------------------------------I--AG----------------------LSASISALDF-CSVTLSVAVGNDCGLVRLYK WD 9 601-639 -IQ---------------------------------CVA---------VF--SV----------------------VNSSVSTLSF-ENCGAVLAVGFECGQVAVFD WD10 667-701 FPD-------------------------------------------------TN----------------------HLEASSDESI-PPRKGILLAMTKNSYLAVLD WD11 793-841 LKH---------------------------------MNEGENKFLQKVTL--SK----------------------PCCWTTMLKK-DGKVSGLVVLYQNGVIEISL WD12 845-883 -TL---------------------------------VVL---------IV--RC----------------------KLLPSLSRSF-QNLEQVVWESSLTSILRWSF WD40 Template TGE---------------------------------CLR---------TL--SG----------------------HTSGVTSVSF-SPDGKRLVSGSEDGTIKVWD |
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