Input parameters:

  Query = CmaCh02G009310 (Len=741)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh02G009310, Len=741):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDLIYCEEEIERFYDTREEISSVSDWGSDCSENCSTSFGDDRDVPENFGYGGWIRNLESVYERRNKFFQWMSLDLDLENS 80  
WD40-rpts                        (_______________WD 1_______________)                          

Query       81 DNKDEEEGVSFGRGYRDRILEDCGTVLRLSGSEGELSSSFTMSSMSEEAPESSGNVSVEESYGYTIRNLDNGTEFIVDCF 160 
WD40-rpts                                                                                      

Query      161 SQDGMLNMLREVGSNRSFSFDEFERNIGQTPLVQELFRKNVEKARPIVNVRKEVKKGWLRKLGAAACIVDNREGAVKHDN 240 
WD40-rpts                                                                                      

Query      241 LNSSSKAGMQQVRVHPYKKQAKDLSSLFVGQEFEAHKGPISTMKFSFDGRYLATAGEDRVVRVWQVIEDVKIDNFNLHNV 320 
WD40-rpts                                 (________________WD 2________________)   (___________

Query      321 DPSSMYFTTNHLSKLDPLDVKETVGKTKLKRSSSTACVIFPPNLFRILEKPLHEFSGHSGEVLDLSWSKKGLLLSSSVDK 400 
WD40-rpts      _____________WD 3_______________________)       (________________WD 4___________

Query      401 TVRLWQLGCDTCIRVYCHNNYVTCVSFNPLDENHFISGSIDGKVRIWEVLACQVVDYIDTREIVSAVCYRPDGKGGIVGS 480 
WD40-rpts      _____)(__________________WD 5__________________)   (________________WD 6________

Query      481 MTGNCRFYNIIDNRLELDAQICLNGKKKLPGKRIIGFEFSPSDPSKLMVCSVDSPVHIISGGDIICKFKGPRNGGNKMSA 560 
WD40-rpts      ________)              (________________WD 7_______________)(__________________W

Query      561 SFTSDGKHIVSASEENIYVWNYNCKDKASRKKKIWSSESFFSHNASIAIPWSGVKITPESPLSPARVCVTAESIPEMEPK 640 
WD40-rpts      D 8_________________)         (_________________WD 9________________)           

Query      641 YPNDDGDSEHKVPSSSPDCFSLSRNLFPELLKGTATWPAEKLHDSSSMAPSPSMCKTEFKFLKNACQSMLSSPHMWGLVI 720 
WD40-rpts                         (__________________________________WD10______________________

Query      721 VTAGWDGRIRTFLNYGLPVRL 741 
WD40-rpts      ____________)        

10 WD40-repeats found in QUERY=CmaCh02G009310 (Len=741):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    19-54       5.40  337.61  0.00175       10.0%      4.17
  WD 2:  Seg 11   268-305      9.02  487.21  1.7e-05       25.0%     52.33
  WD 3:  Seg 15   309-361      5.73  351.18  0.00115       15.0%     50.14
  WD 4:  Seg 19   369-406      7.90  440.79  7.1e-05       35.0%     51.28
  WD 5:  Seg 23   407-448      8.11  449.75  5.4e-05       37.5%     54.80
  WD 6:  Seg 27   452-489      6.86  397.83  0.00027       22.5%     55.28
  WD 7:  Seg 32   504-540      5.67  348.81  0.00124       20.0%     51.02
  WD 8:  Seg 35   541-581      7.49  423.94  0.00012       40.0%     53.95
  WD 9:  Seg 39   591-629      6.28  374.27  0.00056       12.5%     31.56
  WD10:  Seg 44   660-733      3.77  270.47  0.01402       15.0%     33.02

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   19-54     --------------------------------------EISSVSDWGS--DCSENCST-S--------------FGDDRDVPENFGYGGWI
   WD 2  268-305    ------------------------------------FVGQEFEAHKGP--ISTMKFSF-D--------------GRYLATAGEDRVVRVWQ
   WD 3  309-361    -D----------------------------------VKIDNFNLHNVD--PSSMYFTT-NHLSKLDPLDVKETVGKTKLKRSSSTACVIFP
   WD 4  369-406    -E----------------------------------KPLHEFSGHSGE--VLDLSWSK-K--------------G-LLLSSSVDKTVRLWQ
   WD 5  407-448    LG---------------------------------CDTCIRVYCHNNY--VTCVSFNPLD--------------ENHFISGSIDGKVRIWE
   WD 6  452-489    -C----------------------------------QVVDYIDTR-EI--VSAVCYRP-D--------------GKGGIVGSMTGNCRFYN
   WD 7  504-540    NG----------------------------------K----KKLPGKR--IIGFEFSPSD--------------PSKLMVCSVDSPVHIIS
   WD 8  541-581    GG----------------------------------DIICKFKGPRNGGNKMSASFTS-D--------------GKHIVSASEE-NIYVWN
   WD 9  591-629    -K----------------------------------KKIWSSESFFSH--NASIAIPW-S--------------GVKITPESPLSPARVCV
   WD10  660-733    FSLSRNLFPELLKGTATWPAEKLHDSSSMAPSPSMCKTEFKFLKNACQ--SMLSSPHM-W--------------GLVIVTAGWDGRIRTFL

   WD40 Template    TG----------------------------------ECLRTLSGHTSG--VTSVSFSP-D--------------GKRLVSGSEDGTIKVWD