Input parameters:

  Query = CsaV3_1G030810 (Len=774)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_1G030810, Len=774):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 METDEAERVLPFQLQFDKPTASQVKIAEWNPEKDLLAMVTEDSKILLHRFNWQRLWTISPGRSIKSLCWRPDGKVIAVGL 80  
WD40-rpts      (______________________WD 1_____________________)(_________________WD 2_________

Query       81 EDGTVLLHDVENGKLLRSLKSHAVAVVSLNWVEDSQLITDKNEILSTYEDRTRRIFPPAPTIPRMPGLVSGDTGFIDDSE 160 
WD40-rpts      ________)   (____________________WD 3___________________)(______________________

Query      161 DSFTELSNSSQQRFNILCSGDKDGSIRFSIFGVFPIGKINIHELHIPLQDASASCHLLNAEIYKVALSKDFCRLVVMCSG 240 
WD40-rpts      __WD 4_______________________)                  (_________________WD 5__________

Query      241 ELVGHGHDPRKRQITVQGVHGMHSLVLDTSIFRKRKSELHQVAQQASNIGELTEVIRVSLSVMSKQWSDAMHAFQEKFDS 320 
WD40-rpts      ______)                                                                         

Query      321 LSTLIVNHGLDSSAQEEFLSILGGARTSPPVHQFLVNSLGEVGAKRVSKAISGAGSELQLIVLDHLQPAAEIIGFRMGEL 400 
WD40-rpts                                                                                      

Query      401 LGISRWRARFQGVGLDEKLMHNATEKVGTLLVQVERFMRVLSTVLQQFSNFFNWLIRCIKLLMSEPSDQLLPYNSELVVI 480 
WD40-rpts                                                                                      

Query      481 FLKFLYNQDPVNKLLEASENDNNIEIDSELVERVRELALFGGFADCEFLRRTLGLEFQQMESSFKDAFLMPFITISRKIL 560 
WD40-rpts                                                                                      

Query      561 CEDIISLFPFPSSSSCLSSHVPLSVSYYEDSSEVVSADLSCEQKFIDYISFRVPDDSFAEIANCVGIVRRFIHDQSCSNE 640 
WD40-rpts                                                                                      

Query      641 DHSSSEAVLISIPDGSQCVDLSLYKDGQIVLLLNETASTSESSVGSYMMVVQVDDLPFVSMPRSPCLDNWKILQLKDNVV 720 
WD40-rpts                                                                                      

Query      721 PLQMENEKVRNISHAVIPPLAVSASRGVACVFAARKRALVYILEEDEDEVSDAE 774 
WD40-rpts                                                            

5 WD40-repeats found in QUERY=CsaV3_1G030810 (Len=774):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-49       4.23  289.43  0.00781       20.0%     52.76
  WD 2:  Seg  5    50-89       7.03  405.08  0.00022       27.5%     56.83
  WD 3:  Seg  9    93-137      5.34  335.23  0.00189       30.0%     39.58
  WD 4:  Seg 12   138-190      3.62  264.20  0.01701       30.0%     22.21
  WD 5:  Seg 16   209-247      4.44  298.07  0.00597       15.0%     31.66

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-49     METDEAERVLPFQLQFDKPTASQVK-------------IAEWNPEKDLLA------MVTEDSKILLHR
   WD 2   50-89     FNW---------QRLWTISPGRSIK-------------SLCWRPDGKVIA------VGLEDGTVLLHD
   WD 3   93-137    -GK---------LLRSLKSHAVAVV-------------SLNWVEDSQLITDKNEILSTYEDRTRRIFP
   WD 4  138-190    PAP---------TIPRMPGLVSGDTGFIDDSEDSFTELSNSSQQRFNILC------SGDKDGSIRFSI
   WD 5  209-247    -QD---------ASASCHLLNAEIY-------------KVALSKDFCRLV------VMCSGELVGHGH

   WD40 Template    TGE---------CLRTLSGHTSGVT-------------SVSFSPDGKRLV------SGSEDGTIKVWD