Input parameters:

  Query = CmaCh02G013310 (Len=1097)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh02G013310, Len=1097):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRGKDFAAEEPTRLIFVRRWCFGAPTVGTSSYLFVFATLRLNWVKVLENDELGRNSLRREGLLLGSALEMIAEKPSWVRH 80  
WD40-rpts                                 (______________WD 1______________)           (_______

Query       81 EGMQIFSIDVQPGGLRFATGGGDHKVRIWNVKSVGRNLKGDDSNQRLLATLRDHFGSVNCVRWAKHGRYVASGSDDQTIL 160 
WD40-rpts      _________WD 2________________)                  (_______________WD 3____________

Query      161 VHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSLLASGSLDNTVHIWKMSNGICTAVLRGHSSLVK 240 
WD40-rpts      __)                    (_________________WD 4________________)   (______________

Query      241 GVAWDPIGSFIASQSDDKTVIIWRTSDWSLVHRTDGHWTKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEW 320 
WD40-rpts      ___WD 5________________)   (____________________WD 6___________________)        

Query      321 SATFDFLGHNAPVIVVKFNHSMFRRNLTNANEMKAVPVGWTNGASKVEGKESTSYNVIAIGSQDRTITVWTTASPRPLFV 400 
WD40-rpts                              (_____________________WD 7____________________)(________

Query      401 AKHFFTQSVVDLSWSPDGYSLFACSLDGSVKEIGQRLPDSELDEIKRSRYGDVRGRQVNLAETPAQLMLEAASLRQVPSK 480 
WD40-rpts      ___________WD 8__________________)                                              

Query      481 KVVLEPQQNLTHAKSSIDARDASKTLEAQVDESKKSGGAGGGGGASGDGLNKVSSASLKVSSPVKQREYRRPDGRKRIIP 560 
WD40-rpts        (________________WD 9_______________)  (_________________WD10________________)

Query      561 EAVGMSVPLENKSGGIQSSNALDFPSMSSDQKMENNGVVSPECLREISARGMPSQHTDLKKRPGVTARATITDSLVIEKV 640 
WD40-rpts                                                                           (__________

Query      641 PLSSGRDANMMVDSSGNLKTSSSSLATCSSVLSIRVLDKKEGEHTKPIFLEARPKEHAANDTIGAGNASMLKETVISCTK 720 
WD40-rpts      ____________WD11_____________________)                                         (

Query      721 GSRTLWSDRVSGKVTVLAGNANFWAVGCEDGCIQVYTKCGRRSMPTMMMGSAATFIDCDDSWKLLLVTRKGSLYVWDLFN 800 
WD40-rpts      ________________WD12________________)    (_______________WD13_______________)   

Query      801 RSCLLHDSLASLIPLNPDSSTKDSGTIKVISAKLSKSGSPLVLLASRHAFLFDTSLMCWLRVADDCFPASNFSSSWNLGS 880 
WD40-rpts                                                                                      

Query      881 IQSGELAALQVDIRKYLARKPGWSRVTDDGMQTRAHLETQMASSLALKSPNEYRQWLLSYIRFLAREADESRLREVCESL 960 
WD40-rpts                                                                                      

Query      961 LGPPTGMAGDALADTKNLAWDPCVLGMRKHKLLREDILPAMASNRKVQRLLNEFMDLLSEYENVEPKDSLPSTSSVRVPC 1040
WD40-rpts                                                                                      

Query     1041 HEQSAPQQAEKMDTDPTVTHPKPSSKLVMVPTSFAPPLGQVHVGESVEDLVPSEAKS 1097
WD40-rpts                                                               

13 WD40-repeats found in QUERY=CmaCh02G013310 (Len=1097):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    28-61       3.34  252.81  0.02413        7.5%     36.79
  WD 2:  Seg  7    73-110      6.89  399.12  0.00026       20.0%     46.36
  WD 3:  Seg 10   129-163      7.82  437.58  7.9e-05       32.5%     48.46
  WD 4:  Seg 13   184-222      8.47  464.74  3.4e-05       40.0%     55.54
  WD 5:  Seg 17   226-264      9.39  502.57  1.0e-05       37.5%     54.87
  WD 6:  Seg 21   268-312      3.94  277.60  0.01125       12.5%     50.48
  WD 7:  Seg 27   345-391      5.61  346.51  0.00133       20.0%     45.10
  WD 8:  Seg 31   392-434      6.88  398.81  0.00026       32.5%     52.41
  WD 9:  Seg 38   483-519      4.16  286.48  0.00855       12.5%     14.38
  WD10:  Seg 40   522-560      4.96  319.56  0.00307       15.0%     15.72
  WD11:  Seg 42   630-678      3.01  238.92  0.03690       17.5%      7.42
  WD12:  Seg 46   720-757      4.81  313.52  0.00370       25.0%     45.63
  WD13:  Seg 50   762-797      3.04  240.36  0.03532       15.0%     40.15

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   28-61     -G-------T---SSYLFV---------FA------TLRLNWVKVLENDE-----LGRNSLRREG
   WD 2   73-110    ---------E---KPSWVR---------HE------GMQIFSIDVQPGGLRFATGGGDHKVRIWN
   WD 3  129-163    ---------------ATLR---------DH------FGSVNCVRWAKHGRYVASGSDDQTILVHE
   WD 4  184-222    -W-------K---VAMTLR---------GH------TADVVDLNWSPDDSLLASGSLDNTVHIWK
   WD 5  226-264    -G-------I---CTAVLR---------GH------SSLVKGVAWDPIGSFIASQSDDKTVIIWR
   WD 6  268-312    -W-------S---LVHRTD---------GHWTKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSA
   WD 7  345-391    RNLTNANEMK---AVPVGW---------TN------GASKVEGKESTSYNVIAIGSQDRTITVWT
   WD 8  392-434    TA-------SPRPLFVAKH---------FF------TQSVVDLSWSPDGYSLFACSLDGSVKEIG
   WD 9  483-519    -------------VLEPQQ---------NL------THAKSSIDARDASKTLEAQVDESKKSGGA
   WD10  522-560    -G-------G---GASGDG---------LN------KVSSASLKVSSPVKQREYRRPDGRKRIIP
   WD11  630-678    TI-------T---DSLVIEKVPLSSGRDAN------MMVDSSGNLKTSSSSLATCSSVLSIRVLD
   WD12  720-757    KG-------S-----RTLW---------SD------RVSGKVTVLAGNANFWAVGCEDGCIQVYT
   WD13  762-797    RS-------M---PTMMM-------------------GSAATFIDCDDSWKLLLVTRKGSLYVWD

   WD40 Template    TG-------E---CLRTLS---------GH------TSGVTSVSFSPDGKRLVSGSEDGTIKVWD