WDRR: WD40 Repeat Recognition
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JobID: KEB1B1659462711    Submitted: 2022-08-03 01:51:51

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Job status:  [Done] Total run time: 79787423 seconds.    [Download result as txt]    [Query sequence in FASTA]
Input parameters: 
  Query = CmaCh09G002980 (Len=821)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3
Query sequence (CmaCh09G002980, Len=821): 
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MIEFYRNSSIEWKPSPVVALASSADGSQVAAAREDASLEIWLVSPGSVGWHCQLTINGDPTSRVSSLVWCRAGSKDRPSG 80  
WD40-rpts      (__________________WD 1__________________)       (____________________WD 2______

Query       81 RLFSSSIDGSLSEWDLFGLTQKSVLESIGLSIWQIAAAPCNSREVHREVKPKEIENAHVTVNESDCQDCGESEDDSNSSE 160 
WD40-rpts      ______________)   (_________________WD 3_________________)        (_____________

Query      161 LHVQASDEDPSLAIACDDGCVRIYNICDGEELIYKRSLPRVSGRVLSVTWSNDAERIFSGSSDGFIRCWNASLGHEIYRI 240 
WD40-rpts      ____WD 4________________)        (________________WD 5_______________)          

Query      241 TAGLGGLGSGSELCVWSLLFLRCGTLVSADSTGSVQFWDSNHGTLLQAHTLHKGDVNALAATPNHNRVFSAGSDGQVILY 320 
WD40-rpts       (________________WD 6________________)   (_________________WD 7________________

Query      321 KLSNENVVSSEDKYSSEMMKKWIYVGHVRAHTHDIRALTVAVPICREAAEASQDVEVKRIRHKRKPNVFSYHKWAHLGVP 400 
WD40-rpts      )          (______________________WD 8______________________)(______________WD 9

Query      401 ILMSGGDDTKLFAYSAQEFTKFSPHDICPAPQRVPMQLVLNTVFNQAPLLLVQAAHSLDILRVRPKCGSFGDKTCGPSKG 480 
WD40-rpts      ______________)                                      (_________________WD10_____

Query      481 LAKADLLVRVKSKASRKIICSTISNSGKLFAFSDHTKPNLYELKKSGGSKCSWTVNRRKLPNTLPFAHSMVFSFDSSRLI 560 
WD40-rpts      ___________)                                 (_____________________WD11_________

Query      561 IAGHDKRIYVVDVSSLEVLHSFTPFREQQDDILPPAEPPITKIFTSSDGQWLAAVNCFGDLYVFNMEILRQHWFISRLDG 640 
WD40-rpts      ___________)          (___________________WD12__________________)   (___________

Query      641 ASITAGGFPQWNNNVLVVTTSSNQIYAFDIEAKQLGDWSMRHTQALPKRFQEFPGEVIGLSFPPSTTSLPVIVYSSRAMC 720 
WD40-rpts      _______WD13_________________)            (__________________WD14________________

Query      721 LIDFRMSVDQNDEYVMISGQDSTVKNLRGTTINGKLKRKLRDCQTEGRPHGRKNFENFPFRDPVLLIGHLSKTSLLIIEK 800 
WD40-rpts      _)                                                                              

Query      801 PWLEVVNTFDAPPVHRHIYGT 821 
WD40-rpts


14 WD40-repeats found in QUERY=CmaCh09G002980 (Len=821):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-42       8.34  459.13  4.0e-05       25.0%     57.88
  WD 2:  Seg  5    50-95       6.07  365.27  0.00074       40.0%     54.86
  WD 3:  Seg  9    99-138      4.59  304.24  0.00493       12.5%     50.17
  WD 4:  Seg 14   147-185      8.40  461.71  3.7e-05       17.5%     49.43
  WD 5:  Seg 18   194-230      8.84  479.79  2.1e-05       37.5%     45.36
  WD 6:  Seg 22   242-279      6.77  394.32  0.00030       32.5%     42.14
  WD 7:  Seg 25   283-321      8.95  484.37  1.8e-05       22.5%     56.18
  WD 8:  Seg 30   332-381      6.03  363.94  0.00077       15.0%     52.39
  WD 9:  Seg 34   382-415      4.20  288.25  0.00810       17.5%     30.90
  WD10:  Seg 39   454-492      6.01  362.99  0.00080       12.5%     19.02
  WD11:  Seg 44   526-572      7.08  407.06  0.00020       32.5%     44.05
  WD12:  Seg 49   583-625      7.46  422.66  0.00013       22.5%     44.45
  WD13:  Seg 52   629-669      5.82  354.88  0.00103       15.0%     55.82
  WD14:  Seg 56   682-722      2.99  237.98  0.03797       15.0%     34.95
Multiple sequence alignment of 14 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    1-42     MI---------EFY-------RNSSIEWK-PSPVVALASS-A--DG------SQVAAAR-EDASLEIWL
   WD 2   50-95     -W---------HCQ-------L--TINGDPTSRVSSLVWC-R--AGSKDRPSGRLFSSS-IDGSLSEWD
   WD 3   99-138    -L---------TQK-------S--VLESI-GLSIWQIAAA-P--CN------SREVHREVKPKEIENAH
   WD 4  147-185    -Q---------DCG-------E--SEDDS-NSSELHVQAS-D--ED------PSLAIAC-DDGCVRIYN
   WD 5  194-230    ------------YK-------R--SLPRV-SGRVLSVTWS-N--DA------ERIFSGS-SDGFIRCWN
   WD 6  242-279    AG----------LG-------G--LGSGS-ELCVWSLLFL-R--CG------T-LVSAD-STGSVQFWD
   WD 7  283-321    -G---------TLL-------Q--AHTLH-KGDVNALAAT-P--NH------NRVFSAG-SDGQVILYK
   WD 8  332-381    DKYSSEMMKKWIYV-------G--HVRAH-THDIRALTVAVP--IC------REAAEAS-QDVEVKRIR
   WD 9  382-415    HK---------RKP-------N--VFSYH-KWAHLGVPI---------------LMSGG-DDTKLFAYS
   WD10  454-492    AA---------HSL----------DILRV-RPKCGSFGDK-T--CG------PSKGLAK-ADLLVRVKS
   WD11  526-572    SG---------GSKCSWTVNRR--KLPNT-LPFAHSMVFS-F--DS------SRLIIAG-HDKRIYVVD
   WD12  583-625    TP------FREQQD-------D--ILPPA-EPPITKIFTS-S--DG------QWLAAVN-CFGDLYVFN
   WD13  629-669    -L---------RQH-------W--FISRL-DGASITAGGF-PQWNN------NVLVVTT-SSNQIYAFD
   WD14  682-722    HT---------QAL------PK--RFQEF-PGEVIGLSFP-P--ST------TSLPVIV-YSSRAMCLI

   WD40 Template    TG---------ECL-------R--TLSGH-TSGVTSVSFS-P--DG------KRLVSGS-EDGTIKVWD
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Last modified: 09 Jan 2019