WDRR: WD40 Repeat Recognition
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JobID: KBV9P1659462028    Submitted: 2022-08-03 01:40:28

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Job status:  [Done] Total run time: 79786810 seconds.    [Download result as txt]    [Query sequence in FASTA]
Input parameters: 
  Query = CmaCh05G010900 (Len=1128)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3
Query sequence (CmaCh05G010900, Len=1128): 
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFYFNMKYFEEKVQAGEWEEVEKYLSGYTKVDDNRYSMKIFFEIRKQK 80  
WD40-rpts                                                                                      

Query       81 YLEALDRNDKAKAVEILVSDLKVFSTFNEELYKEITQLLTLTNFRENEQLSKYGDTKAARSIMLIELKKLIEANPLFRDK 160 
WD40-rpts                                                                                      

Query      161 LVFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFMDHTCTPPNGPLAPSPVNLPVAKPAPYAPLAAHSPFPPTGA 240 
WD40-rpts                                                        (_________________WD 1________

Query      241 AANANALAGWMANASASSSVQAAVVTTSSIPVPQNQVSILKHARTPPTNPGMVDYQNPEHEQLMKRLRSAQSVEEVTYPA 320 
WD40-rpts      ________)                                 (____________________WD 2_____________

Query      321 PRQQASWSLEDLPRTVALTLHQGSTVTSMDFHPTHHTLLLVGSNNGEVTLWELGIRERLISKPFKLWDLSSRSLAFQAAI 400 
WD40-rpts      _______)(___________________WD 3___________________)                          (_

Query      401 VKDTPISVSRVTWSPDGTFVGVAFTKHLVHLYSYNSSNELNQQSEIDAHAGGVNDLAFAHPNKQLCVVTCGEDKLIKVWD 480 
WD40-rpts      ______________WD 4______________)        (_________________WD 5________________)

Query      481 IGGRKLFTFEGHEAPVYSICPHHKESIQFIFSTALDGKIKAWLYDHMGSRVDYDAPGKWCTRMLYSADGSRLFSCGTSKD 560 
WD40-rpts        (__________________WD 6_________________)   (___________________WD 7__________

Query      561 GESYLVEWNESEGAIKRTYAGFRKKSTGVVQFDTTQNHFLAVGEDSQIKFWDMDNINVLTYTDAEGGLPSLPCLRFNKEG 640 
WD40-rpts      ________)   (_________________WD 8_________________)(___________________WD 9____

Query      641 NLLAVTTDNGFKILANAVGMRSLKAIESTTPFEALRSPMESAMKVSGTPAVASVSPVNCKVERSSPVRPSPIINGVDGLG 720 
WD40-rpts      _______________)(_________________WD10_________________)       (________________

Query      721 RNLDKTRTVEDAIDKAKPWQLAEIVDPANCRSVTMPDNADSSYKVVRLLYTNSGVGLLALGSNGIQKLWKWTRSEQNPSG 800 
WD40-rpts      WD11________________)    (____________________WD12___________________)          

Query      801 KATANVVPQHWQPNSGLLMTNDVSGVNLEEAVPCIALSKNDSYVMSASGGKVSLFNMMTFRVMTTFMAPPPASSFLAFHP 880 
WD40-rpts                  (___________________WD13___________________)   (_________________WD1

Query      881 QDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCLWSIDSWEKRKSITIQLPAGKA 960 
WD40-rpts      4_________________)   (_________________WD15________________)   (_______________

Query      961 PVGDTRVQFHTDQIRLLVAHETQIAIYDASKMDRIRQWVPQDVLPAPISYAAYSCNSQLVYATFCDGNVGVFDADSLRLR 1040
WD40-rpts      ____WD16___________________)   (__________________WD17__________________)       

Query     1041 CRIAPSVYLPPAVLNSSQAVYPLVVATHPLEPNQLAIGLTDGAVKVIEPAESEGKWGVSPPMDNGILNGRMASSSTTASN 1120
WD40-rpts         (____________________WD18___________________)                                

Query     1121 HTPDQIQR 1128
WD40-rpts


18 WD40-repeats found in QUERY=CmaCh05G010900 (Len=1128):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   211-249      3.86  274.08  0.01254        2.5%      0.99
  WD 2:  Seg  5   283-328      4.69  308.38  0.00434        7.5%     47.50
  WD 3:  Seg  9   329-372      6.38  378.40  0.00049       32.5%     51.96
  WD 4:  Seg 15   399-433      6.72  392.21  0.00032       15.0%     50.35
  WD 5:  Seg 19   442-480      7.30  416.21  0.00015       35.0%     48.58
  WD 6:  Seg 23   483-523      7.46  422.72  0.00012       32.5%     56.27
  WD 7:  Seg 27   527-569      6.12  367.56  0.00069       20.0%     55.06
  WD 8:  Seg 31   573-612      7.39  419.77  0.00014       30.0%     58.01
  WD 9:  Seg 35   613-656      6.66  389.70  0.00035       12.5%     54.26
  WD10:  Seg 39   657-696      5.79  353.74  0.00106        7.5%     47.01
  WD11:  Seg 44   704-741      4.77  311.89  0.00389       17.5%     19.45
  WD12:  Seg 48   746-790      6.92  400.56  0.00025       17.5%     53.41
  WD13:  Seg 53   813-856      4.88  316.06  0.00342       15.0%     45.67
  WD14:  Seg 57   860-899      7.08  407.27  0.00020       22.5%     58.92
  WD15:  Seg 61   903-941      8.96  484.60  1.8e-05       30.0%     59.40
  WD16:  Seg 65   945-988      4.07  282.82  0.00957       25.0%     51.46
  WD17:  Seg 69   992-1033     6.26  373.13  0.00058       15.0%     59.36
  WD18:  Seg 74  1044-1088     4.82  313.73  0.00368       17.5%     46.40
Multiple sequence alignment of 18 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1  211-249    -L------A-----PS-----PVN-----L---PV---AK------PAPYA--PLAA-HSP-FP--PTGA----AANANALAG
   WD 2  283-328    ARTPPTNPG-----MV-----DYQ-----N---PE---HE------QLMKR--LRSA-QSV-EE--VTYP----APRQQASWS
   WD 3  329-372    LE------D-----LP-----RTV-----ALTLHQ---GS------TVTSM--DFHP-THHTLL--LVGS----NNGEVTLWE
   WD 4  399-433    ---------------------AIV-----K---DT---PI------SVSRV--TWSP-DGT-FV--GVAF----TKHLVHLYS
   WD 5  442-480    --------------QQ-----SEI-----D---AH---AG------GVNDL--AFAH-PNK-QLCVVTCG----EDKLIKVWD
   WD 6  483-523    -G------R-----KL-----FTF-----E---GH---EA------PVYSICPHHKE-SIQ-FI--FSTA----LDGKIKAWL
   WD 7  527-569    -M------G-----SR-----VDY-----D---AP---GK------WCTRM--LYSA-DGS-RL--FSCGTSKDGESYLVEWN
   WD 8  573-612    -G------A-----IK-----RTY-----A---GF---RK-----KSTGVV--QFDT-TQN-HF--LAVG----EDSQIKFWD
   WD 9  613-656    MD------N-INVLTY-----TDA-----E---GG---LP------SLPCL--RFNK-EGN-LL--AVTT----DNGFKILAN
   WD10  657-696    AV------G-----MR-----SLK-----A---IE---ST------TPFEA--LRSP-MES-AM--KVSG----TPAVASVSP
   WD11  704-741    SS------P-----V-------RP-----S---PI---IN------GVDGL--GRNL-DKT-RT--VEDA----IDKAKPWQL
   WD12  746-790    DP------A-----NC-----RSVTMPDNA---DS---SY------KVVRL--LYTN-SGV-GL--LALG----SNGIQKLWK
   WD13  813-856    PN------S-----GLLMTNDVSG-----V---NL---EE------AVPCI--ALSK-NDS-YV--MSAS-----GGKVSLFN
   WD14  860-899    -F------R-----VM-----TTF-----M---AP---PP------ASSFL--AFHPQDNN-II--AIGM----EDSTIHIYN
   WD15  903-941    -D------E-----VK-----SKL-----K---GH---QK------RITGL--AFST-SLN-IL--VSSG----ADAQLCLWS
   WD16  945-988    -W------E-----KR-----KSI-----T---IQ---LPAGKAPVGDTRV--QFHT-DQI-RL---LVA----HETQIAIYD
   WD17  992-1033   -M------D-----RI-----RQW-----V---PQDVLPA------PISYA--AYSC-NSQ-LV--YATF----CDGNVGVFD
   WD18 1044-1088   AP------SVYLPPAV-----LNS-----S---QA---VY------PLVVA--THPL-EPN-QL--AIGL----TDGAVKVIE

   WD40 Template    TG------E-----CL-----RTL-----S---GH---TS------GVTSV--SFSP-DGK-RL--VSGS----EDGTIKVWD
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Last modified: 09 Jan 2019