Input parameters:

  Query = AT1G36070.1 (Len=418)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G36070.1, Len=418):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEQTKDDSDFEDDCETKKMETDTSAQEARNGKDIQGIQWEGFKYNRDEFRETRLKQYDNFVNILRPSSREKLDKEHGQVV 80  
WD40-rpts                                                                                      

Query       81 EKGKNFYDFQFNTRLVTSTIVHFQLRNLVWATSKHDVYLMQNYSLMHWSSLLQRGKEVLNVARSVTPTQKLPGLFSEPLS 160 
WD40-rpts        (_________________WD 1________________)   (_________________WD 2______________

Query      161 RVQVSSMAVKENLILLGGFDGELLCKCVNQPGVAFCTRLSTEDNAITNTVDIYRDPSGSLRLITANNDCKIRVFDAQSFT 240 
WD40-rpts      __)                             (___________________WD 3__________________)(____

Query      241 RVSEFALDWSVNNTSVSPDGKLLAVVGDSTECLISDSHSGKVISSLRGHKDYSFASAWHPNGLILATGNQDTACRLWDIR 320 
WD40-rpts      ______________WD 4_________________)   (_________________WD 5________________)  

Query      321 NPSESFAVLKGNMGAIRGLKFTPEGRFLAMAEPADFVHIFDTQSGFLQSQEIDLFGEIAGISFSPDTEALYVGVADRTYG 400 
WD40-rpts        (_________________WD 6________________)   (_________________WD 7______________

Query      401 SLLEYKRRKDNHYMDSFY 418 
WD40-rpts      ___)              

7 WD40-repeats found in QUERY=AT1G36070.1 (Len=418):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    83-121      7.26  414.49  0.00016       17.5%     54.06
  WD 2:  Seg  6   125-163      5.54  343.49  0.00146       12.5%     29.51
  WD 3:  Seg 12   193-235      6.11  366.90  0.00071       27.5%     56.22
  WD 4:  Seg 16   236-276      7.52  425.35  0.00012       25.0%     53.04
  WD 5:  Seg 20   280-318      9.82  520.20  6.1e-06       27.5%     52.72
  WD 6:  Seg 24   323-361      8.80  478.09  2.2e-05       20.0%     57.04
  WD 7:  Seg 28   365-404      7.54  425.92  0.00011       25.0%     56.94

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   83-121    -GKNFYDFQ-FNTRLVTS---TIVHFQLR-NLVWATSKHDV-YLMQ
   WD 2  125-163    -LMHWSSLL-QRGKEVLN---VARSVTPT-QKLPGLFSEPL-SRVQ
   WD 3  193-235    -VAFCTRLS-TEDNAITNTVDIYRDPSGSLRLITANNDCKI-RVFD
   WD 4  236-276    AQSFTRVSEFALDWSVNN---TSVSPDGK-LLAVVGDSTEC-LISD
   WD 5  280-318    -GKVISSLR-GHKDYSFA---SAWHPNGL-ILATGNQDTAC-RLWD
   WD 6  323-361    -SESFAVLK-GNMGAIRG---LKFTPEGR-FLAMAEPADFV-HIFD
   WD 7  365-404    -GFLQSQEI-DLFGEIAG---ISFSPDTE-ALYVGVADRTYGSLLE

   WD40 Template    TGECLRTLS-GHTSGVTS---VSFSPDGK-RLVSGSEDGTI-KVWD