Input parameters:

  Query = CmaCh14G011040 (Len=397)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh14G011040, Len=397):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDVDGGGKRVFQRLGAPSGDGRNQKVCYHWRAGKCNRYPCPFLHRELNAPPHATSNGATNAAPKRGNGFSSDDSTVSVPR 80  
WD40-rpts      (_____________WD 1____________)          (_________________WD 2________________)

Query       81 RSPNFSGGSTWGRVHGGGNRVVKKTEKLCNFWVVTGIAFPSGSDKLYTGSKDETVRVWDCQSGQCLAVINLCGEVGSMIT 160 
WD40-rpts                     (___________________WD 3___________________)   (_______________WD

Query      161 EGPWVFVGIPNCVKAWNIQTSADLSLSGPVGLVYALVVGNDLLFAGTQDGSILAWKFNVATNCFEPAASLNGHTLPVVSL 240 
WD40-rpts       4______________)  (________________WD 5_______________)          (_____________

Query      241 VVGANRLYSGSMDHSIKVWSLESLQCLQTLTDHTSVVMSVLCWEQFLLSCSLDKTIKVWAATESGNLEVTYTHTEDHGLL 320 
WD40-rpts      _WD 6______________)   (________________WD 7_______________)   (________________

Query      321 TLCGMHDLDGKPILLCSCNDNSVRLYDLPSFSERGKIHSKGEIRSIQAGPGGVFFTGDGTGQVKVWKWSAEHAAAGM 397 
WD40-rpts      ___WD 8___________________)(_________________WD 9_________________)          

9 WD40-repeats found in QUERY=CmaCh14G011040 (Len=397):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-31       4.73  309.95  0.00413       12.5%      4.84
  WD 2:  Seg  2    42-80       3.62  264.37  0.01691       10.0%     23.75
  WD 3:  Seg  6    96-139      8.68  473.20  2.6e-05       30.0%     55.50
  WD 4:  Seg 10   143-177      4.60  304.71  0.00486       20.0%     43.41
  WD 5:  Seg 14   180-216      6.79  395.06  0.00029       27.5%     53.72
  WD 6:  Seg 19   227-260      7.36  418.74  0.00014       40.0%     48.72
  WD 7:  Seg 23   264-300      8.04  446.96  5.9e-05       47.5%     53.55
  WD 8:  Seg 27   304-347      6.15  368.66  0.00067       22.5%     55.96
  WD 9:  Seg 31   348-387      6.39  378.49  0.00049       22.5%     52.79

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-31     --------------MDVDG----GGKRVFQRLGA-PSGDGRNQKVCYHWR
   WD 2   42-80     -FL-H----RELNAPPHAT----SNGATNAAPKR-GNGFSSDDSTVSVPR
   WD 3   96-139    GGG-NRVVKKTEKLCNFWV----VTGIAFPSGSD-KLYTGSKDETVRVWD
   WD 4  143-177    -GQ-C----LAVINLCGEV----G---SMITEGP-WVFVGI-PNCVKAWN
   WD 5  180-216    -TS-A----DLSLSGPVGL----VYALVVGND---LLFAGTQDGSILAWK
   WD 6  227-260    ---------AASLNGHTLP----VVSLVVGAN---RLYSGSMDHSIKVWS
   WD 7  264-300    -LQ-C----LQTLTDHTSV----VMSVLCWEQ---FLLSCSLDKTIKVWA
   WD 8  304-347    -SG-N----LEVTYTHTEDHGLLTLCGMHDLDGKPILLCSCNDNSVRLYD
   WD 9  348-387    LPSFS----ERGKIHSKGE----IRSIQAGPGGV--FFTGDGTGQVKVWK

   WD40 Template    TGE-C----LRTLSGHTSG----VTSVSFSPDGK-RLVSGSEDGTIKVWD