Input parameters:

  Query = CsaV3_1G040620 (Len=369)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_1G040620, Len=369):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLGDATNWDEAAYRESIYKEREIQTRTVFRTAWAPSLNGCPETIVAASSDGSVASYSIASCISKLQFGYGNTKSLLAAEP 80  
WD40-rpts                (_____________________WD 1____________________)                    (__

Query       81 NCFLQGHDGPTYDVKFYDNGDNTLLLSCGDDGHIRGWRWRDCTDIKVPISLQGSHIEPVMDLINPQFKGPWGALSPIPEN 160 
WD40-rpts      ________________WD 2_________________)                            (_____________

Query      161 NAIATDAQSGSIFSAAGDSCAYCWDLESGKVKMVFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDPA 240 
WD40-rpts      ____WD 3________________)   (_________________WD 4________________)          (__

Query      241 KDKKLKGHFSFVRCIALDASESWLACADGRSISVWNLPSSEFISKTLTRSSLQDMVFCDNQILGVGAEPFLTRFDINGSV 320 
WD40-rpts      _______________WD 5________________)   (_______________WD 6_______________)  (__

Query      321 LSQIQCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR 369 
WD40-rpts      ______________WD 7________________)              

7 WD40-repeats found in QUERY=CsaV3_1G040620 (Len=369):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    11-57       6.40  379.15  0.00048       15.0%     45.23
  WD 2:  Seg  7    78-118      7.74  434.44  8.7e-05       32.5%     49.95
  WD 3:  Seg 13   147-185      7.34  417.88  0.00015       10.0%     37.50
  WD 4:  Seg 16   189-227     10.07  530.65  4.4e-06       27.5%     56.24
  WD 5:  Seg 21   238-276      8.66  472.50  2.7e-05       22.5%     44.43
  WD 6:  Seg 24   280-315      3.60  263.34  0.01746       10.0%     54.23
  WD 7:  Seg 28   318-355      7.70  432.75  9.2e-05       25.0%     54.61

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   11-57     AAYRESIYKEREIQTRTVFRTAWAPSLNGCP--ETIVAASSDGSVASYS
   WD 2   78-118    -A---EPNCFLQGHD----GPTYDVKFYDNGDNTLLLSCGDDGHIRGWR
   WD 3  147-185    -F---KGPWGALSPI----PENNAIATDAQS--GSIFSAAGDSCAYCWD
   WD 4  189-227    -G---KVKMVFKGHS----DYLHCIVARNTV--NQIITGSEDGTARIWD
   WD 5  238-276    DP---AKDKKLKGHF----SFVRCIALDASE--SWLACAD-GRSISVWN
   WD 6  280-315    -S---EFISKTLTRS----S-LQDMVFCDN----QILGVGAEPFLTRFD
   WD 7  318-355    -G---SVLSQIQCAP----QSAFSVALHPSG--VAAVGGY-GGLVDVIS

   WD40 Template    TG---ECLRTLSGHT----SGVTSVSFSPDG--KRLVSGSEDGTIKVWD