Input parameters:

  Query = Arundo_Drought_Unigene032775 (Len=476)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Arundo_Drought_Unigene032775, Len=476):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 LISLQRFPRSLPCPALFPTSSAQLATSPVGACQPMAHDLRDDLELVAADGDYYYFDDFDADDGFRTAGASEEGGATDQNK 80  
WD40-rpts                                                                                      

Query       81 QMDDTSALDYKEGKDMQGIPWERLNYSRDQYREMRLKQYKNYQSLARSRSGLEKECKQVQRKDTFFDFHFNTRAVKSTIA 160 
WD40-rpts                                                                          (___________

Query      161 HFQLRNLLWATSKHDVYSVQNYSVMHWSPLLKRGKEVLDVASQLVPAEEAHGARPLSRVQVSTMALKDNLIVAGGFQGEL 240 
WD40-rpts      ______WD 1_________________)                                                    

Query      241 ICKYVDKPGVAFCTNLTGNNNSITNAVDIYQTPNGATRVTAANNDCVVRTFDTERFSLLSQFTFPWSVNNTSVSPDGKLL 320 
WD40-rpts               (___________________WD 2__________________)(__________________WD 3_____

Query      321 AVLGDSSDCLIADPNSGKEVATLRGHLDYSFSSAWHPGGHVLATGNQDATCRLWDVRNPSRSFAVLGGRIGAVRGLRFSA 400 
WD40-rpts      ____________)   (_________________WD 4________________)    (_________________WD 

Query      401 DGRFLAAAEAADFVHVYDAAAGYGAEQEVDLFGEISGAAFSPDGETLFVSVADRTYGGLLEFRRRRSYGYLDAYFY 476 
WD40-rpts      5________________)   (_________________WD 6_________________)               

6 WD40-repeats found in QUERY=Arundo_Drought_Unigene032775 (Len=476):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   149-188      4.26  290.52  0.00755       10.0%     37.43
  WD 2:  Seg 11   250-292      6.63  388.61  0.00036       20.0%     55.70
  WD 3:  Seg 15   293-333      7.85  439.00  7.5e-05       27.5%     57.81
  WD 4:  Seg 19   337-375     10.22  536.95  3.6e-06       35.0%     53.26
  WD 5:  Seg 23   380-418      9.05  488.68  1.6e-05       25.0%     56.05
  WD 6:  Seg 27   422-461      7.45  422.27  0.00013       22.5%     54.70

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  149-188    HFN-TRAVKSTIAHFQLR---NLLWATSK-HDVYSVQNYSV-MHWS
   WD 2  250-292    -VA-FCTNLTGNNNSITNAVDIYQTPNGATRVTAANNDCVV-RTFD
   WD 3  293-333    TERFSLLSQFTFPWSVNN---TSVSPDGK-LLAVLGDSSDC-LIAD
   WD 4  337-375    -GK-EVATLRGHLDYSFS---SAWHPGGH-VLATGNQDATC-RLWD
   WD 5  380-418    -SR-SFAVLGGRIGAVRG---LRFSADGR-FLAAAEAADFV-HVYD
   WD 6  422-461    -GY-GAEQEVDLFGEISG---AAFSPDGE-TLFVSVADRTYGGLLE

   WD40 Template    TGE-CLRTLSGHTSGVTS---VSFSPDGK-RLVSGSEDGTI-KVWD