Input parameters:

  Query = CsaV3_7G032650 (Len=624)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_7G032650, Len=624):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKMEILKSLPIAAFTPDGDYLAIVSSNGTLKIWSTRDGSLLAEWKDLDGKNDFGYSCMACCFLGKKRKSSYCVVAIGTNS 80  
WD40-rpts         (_____________WD 1____________)(________________________WD 2_________________

Query       81 GDVLAVNASNGEKKWVSAGCHPGGVIGLSFANKGCRLRTVGSNGMASEMDTETGNIIKEFKASKKSISSSAFSLDERYLV 160 
WD40-rpts      ______)   (_________________WD 3_________________)   (________________WD 4______

Query      161 VAGKKLKILSTDDGDELIVHPDKLGPVKLVSVSDDAKTIITSELGAKHLQVWWCNISAGKFSRGPILSMKHPPFVSECRN 240 
WD40-rpts      _________)   (_________________WD 5_________________)                (__________

Query      241 VSNQEDSVVVLSVSVSGAAYLWKLKVLSEDEVTPTKVSVKANDNQSAEENHGSAKKNRASVLASRIHGIGDNEVSVLVTH 320 
WD40-rpts      ____WD 6______________)                                                         

Query      321 GSVDLPQHTLLDIGYTVKEDANTAHENKTLQQNDCVSEQGPHEIEQVITPKSKKSKKKRAASELDSLTAGDVSDVGNGDT 400 
WD40-rpts                                                                                      

Query      401 SDVLFNDDLNEPSMGEKLASLNLADQNKDGGREQEDPSVPVIPPSADSVQVLLKQALHADDRALLLECLYTKDVKVISKS 480 
WD40-rpts                                                                                      

Query      481 IAQLNSSDVLTLLHALISFIQSRGAILVCALPWLRCLILQHASKIMSQESSLLALNSLYQLIESRTSTFQSALLLSSSLD 560 
WD40-rpts                                                                                      

Query      561 FLYTEVLDKEENDNDTIVPIIYEEEDSDENETGDEMETNEDDERDEVEAFDDLSAGEVDDDMSE 624 
WD40-rpts                                                                      

6 WD40-repeats found in QUERY=CsaV3_7G032650 (Len=624):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-34       5.83  355.40  0.00101       25.0%     45.30
  WD 2:  Seg  4    35-87       4.60  304.79  0.00485       15.0%     44.33
  WD 3:  Seg  8    91-130      7.56  426.80  0.00011       32.5%     57.92
  WD 4:  Seg 12   134-170      5.96  360.87  0.00085       20.0%     50.59
  WD 5:  Seg 16   174-213      7.08  407.00  0.00020       25.0%     50.76
  WD 6:  Seg 21   230-263      5.95  360.45  0.00086       20.0%     45.14

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    4-34     --------------E-ILKSLPIA--------AFTPDGDYLAIVS-SNGTLKIWS
   WD 2   35-87     TRDGSLLAEWKDLDG-KNDFGYSCMACCFLGKKRKSSYCVVAIGT-NSGDVLAVN
   WD 3   91-130    -GE-----KKWVSAGCHPGGVIGL--------SFANKGCRLRTVG-SNGMASEMD
   WD 4  134-170    -GN-----IIKEFKA-SKKSISSS--------AFSLDERYLVVAG-KK--LKILS
   WD 5  174-213    -GD-----ELIVHPD-KLGPVKLV--------SVSDDAKTIITSELGAKHLQVWW
   WD 6  230-263    -----------KHPP-FVSECRNV--------SNQEDSVVVLSVS-VSGAAYLWK

   WD40 Template    TGE-----CLRTLSG-HTSGVTSV--------SFSPDGKRLVSGS-EDGTIKVWD