Input parameters:

  Query = CsaV3_3G011740 (Len=494)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_3G011740, Len=494):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVKMQDYGKCPVTGEPLSIDDIVPIKTGKIVKPRQAASIPGMLGMFQNEWDVLVLSNFALEQQLHTARQELSHALYQHDA 80  
WD40-rpts                                                                                      

Query       81 ACRVIARLKKERDEARSLLALAERQMPLSSTSFSSNAAAVNVNGKRVNEDEELGPDGKKIRPGISDAVISELTECNAALS 160 
WD40-rpts                                               (___________________________WD 1_______

Query      161 QQRKRRQIPATLVPVEALENYTQISSHPLHKTSKPGIMSLDIHHEKDVIATGGLDTNAVLFGRSSGEILSTLSGHSKKVT 240 
WD40-rpts      ___________________)      (_______________WD 2_______________)   (______________

Query      241 SVKFVGRDDLFLTGSADKTVRVWQQSDDGNYNCRHILKDHTAEVQAVTVHATNDFFVTASLDNTWCFYELASGLCLTQVA 320 
WD40-rpts      ___WD 3________________)      (_________________WD 4________________)   (_______

Query      321 EDSETEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQKNVAKFDGHVGAVTAISFSENGYFLATAAHDGVKLWDLRKLKN 400 
WD40-rpts      ___________WD 5_________________)   (________________WD 6________________)   (__

Query      401 FRTFAPYDSDTPTNSVDFDHSGSYLAIAGSDIRVYQVASVKSEWNCIKTLPDLSGTGKATCLKFGPDAKYLAVGSMDRNL 480 
WD40-rpts      _______________WD 7________________)       (__________________WD 8______________

Query      481 RIFGVPGEDGAMET 494 
WD40-rpts      ___)          

8 WD40-repeats found in QUERY=CsaV3_3G011740 (Len=494):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   122-180      4.88  316.36  0.00339       17.5%     25.23
  WD 2:  Seg  4   187-222      7.01  404.21  0.00022       10.0%     50.22
  WD 3:  Seg  7   226-264     10.38  543.30  3.0e-06       47.5%     57.31
  WD 4:  Seg 11   271-309      8.61  470.27  2.9e-05       25.0%     54.79
  WD 5:  Seg 15   313-353      8.86  480.47  2.1e-05       40.0%     58.78
  WD 6:  Seg 19   357-394      8.49  465.29  3.3e-05       32.5%     51.46
  WD 7:  Seg 23   398-436      5.67  348.79  0.00124       27.5%     49.75
  WD 8:  Seg 27   444-484      7.86  439.23  7.5e-05       32.5%     54.42

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  122-180    VN----------GKRV--NEDEELGPDGKKIRPGISDAVISELTECNAALSQQRKRRQIPATLVPVEALEN
   WD 2  187-222    ----HPLHK--TSKPG--IMSLDIHHEKDVIATGGLDTNA---------------------------VLFG
   WD 3  226-264    -GEILSTLS--GHSKK--VTSVKFVGRDDLFLTGSADKTV---------------------------RVWQ
   WD 4  271-309    -YNCRHILK--DHTAE--VQAVTVHATNDFFVTASLDNTW---------------------------CFYE
   WD 5  313-353    -GLCLTQVAEDSETEG--YTSAAFHPDGLILGTGTSEALV---------------------------KIWD
   WD 6  357-394    -QKNVAKFD--GHVGA--VTAISFSENGYFLATAAHD-GV---------------------------KLWD
   WD 7  398-436    -LKNFRTFA--PYDSDTPTNSVDFDHSGSYLAIAGSD--I---------------------------RVYQ
   WD 8  444-484    -WNCIKTLPDLSGTGK--ATCLKFGPDAKYLAVGSMDRNL---------------------------RIFG

   WD40 Template    TGECLRTLS--GHTSG--VTSVSFSPDGKRLVSGSEDGTI---------------------------KVWD