WDRR: WD40 Repeat Recognition
| [HOME] [JOB LIST] [PRE-CALCULATED RESULTS] [VISITORS] [ABOUT] |
| JobID: JZRKA1659503377 Submitted: 2022-08-03 13:09:37 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79747643 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh15G008350 (Len=726) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh15G008350, Len=726): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MYGDPQQFQQQQQPNQHPLGGDFPRGPPPSGPPMMRQPSASSTTLAPEFQQHHHPRHPSGPAPPYEAHGDSFGAKRMRKL 80
WD40-rpts
Query 81 TQRRAVDYTSTVVRYMQIRMWQRDSMDRTVLQSTPAASIDMLPPAAYSDNPSTSFAAKFVHTSINKNRCSINRVLWTPTG 160
WD40-rpts (_________________________WD 1_________
Query 161 RRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGSIKYWQNNMNNVKANKSAHKESVRDLSF 240
WD40-rpts _______________) (_________________WD 2________________) (_________________W
Query 241 CRTDLKFCSCSDDTTVKVWDFARCQEERSLSGHGWDVKSVDWHPTKSLLVSGGKDNLVKLWDAKSGKELCSFHGHKNTVL 320
WD40-rpts D 3________________) (_________________WD 4________________) (______________
Query 321 CVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSFDGSIFHWLVGHETPQIEISNA 400
WD40-rpts ___WD 5________________) (_________________WD 6_________________)(____________
Query 401 HDNSVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFSTGYNEQNPAGSARMTGNFVVPDGPTTPGPFPPGLARN 480
WD40-rpts _______WD 7__________________) (______________________WD 8____________________
Query 481 EGTIPGIGVAMPLSDTAAMGEHKQPHQISMPVGAPPLPPGPHPSLLAANQQHSFQQNPQQFMQQQQQQQLQHHQNQQMAP 560
WD40-rpts _)
Query 561 GPMQPQNLPHLQPPSHFPLLPHPNLPRPPQMPSLNMPSQPGSLPSPGPASVQMPMPGPMGMQGSMNQMGPPMQQNHFMGM 640
WD40-rpts
Query 641 NPMHSGSMPTSGAPPSVQGFQNSLPNMQGPSNASGAPMYPQGGAFNRTQAGQMPMTPGFNPYQFGGQPGMPPPQQAGPPP 720
WD40-rpts
Query 721 HGQTPQ 726
WD40-rpts
 8 WD40-repeats found in QUERY=CmaCh15G008350 (Len=726): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 5 122-176 7.46 422.79 0.00012 22.5% 51.90 WD 2: Seg 9 180-218 8.92 483.21 1.9e-05 27.5% 55.71 WD 3: Seg 13 222-260 9.46 505.33 9.6e-06 32.5% 54.59 WD 4: Seg 17 264-302 9.89 523.14 5.5e-06 42.5% 57.67 WD 5: Seg 21 306-344 9.41 503.49 1.0e-05 30.0% 54.44 WD 6: Seg 25 348-387 8.13 450.66 5.2e-05 35.0% 58.80 WD 7: Seg 29 388-430 9.00 486.61 1.7e-05 32.5% 55.25 WD 8: Seg 32 434-482 4.14 285.52 0.00881 15.0% 18.95Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 122-176 LP---PAAYSDNPSTSFAAKFVHTSINKNR----------CSINRVLWTP-TGRRLITGSQSGEFTLWN WD 2 180-218 -F---NFE---------------MILQAHD----------QAIRSMVWSH-NDNWMVSGDDGGSIKYWQ WD 3 222-260 -N---NVK---------------ANKSAHK----------ESVRDLSFCR-TDLKFCSCSDDTTVKVWD WD 4 264-302 -C---QEE---------------RSLSGHG----------WDVKSVDWHP-TKSLLVSGGKDNLVKLWD WD 5 306-344 -G---KEL---------------CSFHGHK----------NTVLCVKWNQ-NGNWVLTASKDQIIKLYD WD 6 348-387 -M---KEL---------------ESFRGHR----------KDVTALAWHPFHEEYFVSGSFDGSIFHWL WD 7 388-430 VGHETPQI---------------EISNAHD----------NSVWDLAWHP-IGYLLCSGSNDHTTKFWC WD 8 434-482 -P---GDT---------------ARDKFSTGYNEQNPAGSARMTGNFVVP-DGPTTPGPFPPGLARNEG WD40 Template TG---ECL---------------RTLSGHT----------SGVTSVSFSP-DGKRLVSGSEDGTIKVWD |
|
Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |