WDRR: WD40 Repeat Recognition
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| JobID: JZDZN1450990193 Submitted: 2015-12-25 04:49:53 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 288260902 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = sp_P08111_L2GL_DROME (Len=1161) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (sp_P08111_L2GL_DROME, Len=1161): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MLKFIRGKGQQPSADRHRLQKDLFAYRKTAQHGFPHKPSALAYDPVLKLMAIGTQTGALKVFGQPGVELYGQHTLLNNSA 80
WD40-rpts (____________________WD 1____________________) (________
Query 81 SELNVQLLEWVYGTGRILSLTAANQLILWEPVGATLLPIKTLPFDGKLKKVSSLCCSLSKDLLWIGTEGGNIYQLDLHTF 160
WD40-rpts _________WD 2________________) (_________________WD 3________________)
Query 161 TIKEPVIYHDVVLEQVPPAYKLNPGAIESIRQLPNSPSKLLVAYNRGLCVLWDFESASVQRAYIAPGHGQSVGLTVNFEG 240
WD40-rpts (____________________WD 4___________________)(___________________WD 5___
Query 241 SEFTWYHADGSYATWSIDNPEPPSNVNYVPYGPDPCKSINRLYKGKRRSNDVIVFSGGMPRSAYGDHNCVSVHASDGHKV 320
WD40-rpts _______________)
Query 321 CLDFTSKVIDFFVTFENNRDVAEVLVVLLEEELCAYDLTDPNICAIKAPYLHSVHASAVTCNYLASEVVQSVYESILRAG 400
WD40-rpts (
Query 401 DEQDIDYSNISWPITGGTLPDNLEESVEEDATKLYEILLTGHEDGSVKFWDCTGVLLKPIYNFKTSSIFGSESDFRDDAA 480
WD40-rpts _______________________WD 6_______________________)
Query 481 ADMSAEQVDEGEPPFRKSGLFDPYSDDPRLAVKKIAFCPKTGQLIVGGTAGQIVIADFIDLPEKVSLKYISMNLVSDRDG 560
WD40-rpts
Query 561 FVWKGHDQLNVRSNLLDGEAIPTTERGVNISGVLQVLPPASITCMALEASWGLVSGGTAHGLVLFDFKNFVPVFHRCTLN 640
WD40-rpts
Query 641 PNDLTGAGEQLSRRKSFKKSLRESFRKLRKGRSTRTNQSNQVPTTLEARPVERQIEARCADDGLGSMVRCLLFAKTYVTN 720
WD40-rpts
Query 721 VNITSPTLWSATNASTVSVFLLHLPPAQTAATAVPSASGNAPPHMPRRISAQLAKEIQLKHRAPVVGISIFDQAGSPVDQ 800
WD40-rpts
Query 801 LNAGENGSPPHRVLIASEEQFKVFSLPQLKPINKYKLTANEGARIRRIHFGSFSCRISPETLQSMHGCSPTKSTRSHGDG 880
WD40-rpts
Query 881 EADPNISGSLAVSRGDVYNETALICLTNMGDIMVLSVPELKRQLNAAAVRREDINGVSSLCFTNSGEALYMMSSSELQRI 960
WD40-rpts
Query 961 ALATSRVVQPTGVVPVEPLENEESVLEENDAENNKETYACDEVVNTYEIKNPSGISICTRPAEENVGRNSVQQVNGVNIS 1040
WD40-rpts
Query 1041 NSPNQANETISSSIGDITVDSVRDHLNMTTTTLCSINTEETIGRLSVLSTQTNKASTTVNMSEIPNINISNLEDLESKRN 1120
WD40-rpts
Query 1121 TTETSTSSVVIKSIITNISHEKTNGDNKIGTPKTAPEESQF 1161
WD40-rpts
 6 WD40-repeats found in QUERY=sp_P08111_L2GL_DROME (Len=1161): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 18-63 4.55 302.57 0.00520 17.5% 42.49 WD 2: Seg 4 72-110 4.32 293.21 0.00694 15.0% 50.86 WD 3: Seg 9 118-156 4.98 320.24 0.00301 27.5% 51.80 WD 4: Seg 14 169-213 3.82 272.36 0.01322 17.5% 47.72 WD 5: Seg 17 214-256 4.87 315.64 0.00347 10.0% 57.26 WD 6: Seg 29 400-451 4.29 291.71 0.00727 27.5% 25.26Multiple sequence alignment of 6 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 18-63 RLQKDLFAYR---K------------T----AQHGFPHKPSALAYDP-VLKLMAIGTQTGALKVFG WD 2 72-110 -QH------T---L------------L----NNSASELNVQLLEWVY-GTGRILSLTAANQLILWE WD 3 118-156 PIK------T---L-----------------PFDGKLKKVSSLCCSL-SKDLLWIGTEGGNIYQLD WD 4 169-213 HDV------V---L------------EQVPPAYKLNPGAIESIRQLPNSPSKLLVAYNRGLCVLWD WD 5 214-256 FES------ASVQR------------A----YIAPGHGQSVGLTVNF-EGSEFTWYHADGSYATWS WD 6 400-451 GDE------Q---DIDYSNISWPITGG----TLPDNLEESVEEDATK-LYEILLTGHEDGSVKFWD WD40 Template TGE------C---L------------R----TLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD |
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