WDRR: WD40 Repeat Recognition
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| JobID: JYEMX1578825090 Submitted: 2020-01-12 18:31:30 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 160427047 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = TPR2 (Len=1131) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (TPR2, Len=1131): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80
WD40-rpts
Query 81 YLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLTLENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREK 160
WD40-rpts
Query 161 LAFPSFKASRLRTLINQSLNWQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLPVAAVARPSNFVPLGVHGGPFQ 240
WD40-rpts
Query 241 SNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQVNELKHPRAPSNSLGLMDYQSADHEQLMKRLRSAQTSNE 320
WD40-rpts (________________WD 1_
Query 321 VTYPAHSHPPASLDDLPRNVVSTIRQGSVVISMDFHPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIF 400
WD40-rpts ______________) (_________________WD 2_________________) (___________
Query 401 QGSIVKEPSISVTRVAWSPDGNLLGVSFTKHLIHVYAYQGSDLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCGDDKLIK 480
WD40-rpts ___________WD 3_____________________) (__________________WD 4_______________
Query 481 VWDLSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSRVDYDAPGQWCTTMLYSADGSRLFSCGT 560
WD40-rpts __) (__________________WD 5_________________) (___________________WD 6_______
Query 561 SKEGDSFLVEWNESEGALKRTYLGFRKKSAGVVQFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFN 640
WD40-rpts ___________) (_________________WD 7_________________)(___________________WD 8_
Query 641 KDGNLLAVTTADNGFKILANTDGLRTLRAFEARSFEASKASIDMKVSTSAMASSISPAIGKIEHMDAGSPARPTPIPNGI 720
WD40-rpts __________________) (__________________WD 9_________________) (____________
Query 721 EAMSRTMEKPRNLDSVDKSKPLELTEIVDPTQCRQVTMPDSKDSVSKVARLLYTNSGVGVLALGSNGVQRLWKWIRNEQN 800
WD40-rpts _____WD10________________)(_____________________WD11____________________)
Query 801 PTGKATASVTPQHWQPNSGLLMANDVPENPEGSVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAF 880
WD40-rpts (_______________WD12______________) (_________________W
Query 881 HPQDNNIIAIGMEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFFWTADSWEKKKSSAIQLPPG 960
WD40-rpts D13_________________) (_________________WD14________________) (_____
Query 961 KAPVGDTRVQFHNDQIQLLVSHETQLAIYDASKMECIHKWVPQEALSSPITSASYSCNSQLVYASFADGNIAVFDAESLR 1040
WD40-rpts __________WD15_______________)(____________________WD16___________________)
Query 1041 LRCRIAPSAYMPQPTPNSAPIFPQVITAHPQEPNQLAVGLSDGSVKVIEPSELSRRWGVGVAAGSDKAGTENGRPSSSSA 1120
WD40-rpts (___________________WD17___________________)
Query 1121 ANNSSSDQIQR 1131
WD40-rpts
 17 WD40-repeats found in QUERY=TPR2 (Len=1131): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 4 299-335 4.03 281.21 0.01006 7.5% 39.94 WD 2: Seg 7 337-376 6.30 374.84 0.00055 22.5% 54.64 WD 3: Seg 12 389-437 6.86 398.02 0.00027 25.0% 47.89 WD 4: Seg 15 443-483 6.86 397.97 0.00027 27.5% 54.61 WD 5: Seg 19 486-526 7.26 414.58 0.00016 32.5% 57.11 WD 6: Seg 23 530-572 6.46 381.56 0.00045 22.5% 51.87 WD 7: Seg 27 576-615 7.01 404.21 0.00022 30.0% 57.68 WD 8: Seg 31 616-659 6.98 402.93 0.00023 17.5% 57.40 WD 9: Seg 35 664-704 5.57 344.79 0.00140 12.5% 52.92 WD10: Seg 39 708-746 6.62 388.03 0.00037 10.0% 52.26 WD11: Seg 43 747-793 6.66 389.67 0.00035 12.5% 46.23 WD12: Seg 48 824-858 5.21 329.84 0.00223 10.0% 41.36 WD13: Seg 51 862-901 7.11 408.18 0.00020 22.5% 60.00 WD14: Seg 55 905-943 8.78 477.33 2.3e-05 30.0% 58.16 WD15: Seg 59 955-990 4.26 290.78 0.00749 17.5% 42.94 WD16: Seg 62 991-1035 7.19 411.71 0.00018 25.0% 49.94 WD17: Seg 67 1046-1089 5.89 357.89 0.00093 15.0% 41.82Multiple sequence alignment of 17 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 299-335 ----------------D---------YQSAD-HEQLMK--RLRSA--QT---SNE-V--TYP----AHSHPPASLDD WD 2 337-376 -PR-------N-----V---------VSTIR-QGSVVI--SM-DF--HP---SHHTL--LAV----GCSSGEVTLWE WD 3 389-437 KIW-------N-----MAACSVIFQGSIVKE-PSISVT--RV-AW--SP---DGN-L--LGV----SFTKHLIHVYA WD 4 443-483 -LR-------Q-----H---------LEIDA-HVGCVN--DL-AF--AH---PNK-QMCVVT----CGDDKLIKVWD WD 5 486-526 -GK-------K-----L---------FTFEG-HEAPVY--SI-CPHQKE---NIQ-F--IFS----TALDGKIKAWL WD 6 530-572 -VG-------S-----R---------VDYDA-PGQWCT--TM-LY--SA---DGS-R--LFSCGTSKEGDSFLVEWN WD 7 576-615 -GA-------L-----K---------RTYLGFRKKSAG--VV-QF--DT---TRN-R--FLA----VGEDNQIKFWN WD 8 616-659 MDN---TNLLT-----V---------VEAEG-GLPNLP--RL-RF--NK---DGN-L--LAV----TTADNGFKILA WD 9 664-704 -LR-------T-----L---------RAFEA-RSFEASKASI-DM--KV---STS-A--MAS----SISPAIGKIEH WD10 708-746 -GS-------P-----A---------RPTPI-PNGIEA--MS-RT--ME---KPR-N--LDS----VDKSKPLELTE WD11 747-793 IVDPTQCRQVT-----M---------PDSKD-SVSKVA--RL-LY--TN---SGV-G--VLA----LGSNGVQRLWK WD12 824-858 ND-------------------------VPEN-PEGSVP--CI-AL--SK---NDS-Y--VMS----AC-GGKVSLFN WD13 862-901 -FK-------V-----M---------TTFMP-PPPAST--FL-AF--HP--QDNN-I--IAI----GMEDSSIHIYN WD14 905-943 -DE-------V-----K---------TKLKG-HQKHIT--GL-AF--ST---ALN-I--LVS----SGADAQLFFWT WD15 955-990 ----------I-----Q---------LPPGK-APVGDT--RV-QF--HN---DQ--I--QLL----VSHETQLAIYD WD16 991-1035 ASK-------MECIHKW---------VPQEA-LSSPIT--SA-SY--SC---NSQ-L--VYA----SFADGNIAVFD WD17 1046-1089 APS-------A----YM---------PQPTP-NSAPIF--PQ-VI--TAHPQEPN-Q--LAV----GLSDGSVKVIE WD40 Template TGE-------C-----L---------RTLSG-HTSGVT--SV-SF--SP---DGK-R--LVS----GSEDGTIKVWD |
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