Input parameters:

  Query = CsaV3_6G041790 (Len=668)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_6G041790, Len=668):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLSSDGDADVFFDSEDYLPLEESLVAEEADFSKLGYEIWMSEPQSIKKRRERFLQEVGFVDFASSSTCAQDSEIESSCSS 80  
WD40-rpts      (_________________WD 1_________________)                                        

Query       81 ERMELERLTECSGAVSSSDYTPSCNVEENDLVVCHNEMQSAEFDNEATSRLSSVSDSSFRRPQGEANVEACQDADVGKRK 160 
WD40-rpts       (_______________WD 2_______________)   (_________________WD 3_________________)

Query      161 ILTWWKSFKNKAARRRSADFSRESELNSPKSQSCRMKVYQHKKRCSEFSALYMRQQICAHKGLIWTMKFSPDGKYLASGG 240 
WD40-rpts      (_________________WD 4_________________)          (_________________WD 5________

Query      241 EDGVVRIWRVTYANASSEFLADDGNYNTKPKEGKSSFSSKPLRFATVVIPEKVFQIDELPIQELHGHSSDILDIAWSTSN 320 
WD40-rpts      ________)   (____________________WD 6___________________)(________________WD 7__

Query      321 CLLSSSKDKTVRLWQVSSDQCLNVFHHKNYVTCVQFNPMDENFFVSGSIDGKIRIWGVKKQRVVDWADIRDVITAVSYRP 400 
WD40-rpts      ______________)  (_________________WD 8_________________)  (_________________WD 

Query      401 DGKGFAVGSITGTCRFYETSGDYLHLSAQINVQGRKKASGKRITGIQFFRENSQRVMITSEDSKVRIFEGTEIIHKYKGL 480 
WD40-rpts      9________________)           (_________________WD10_________________)   (_______

Query      481 PKSGSQMSASFTKNGKHIVSVGEDSRVYMWNYDSLFLPSSKEAKSQQSCEHFFSDGVSVAIPWSGVGTEPNCFSNNQALF 560 
WD40-rpts      __________WD11________________)           (_________________WD12________________

Query      561 SNRKNYQRAASWTRETDRFSLSNWFSADGLFRGSATWPEERLPLWDLPITEDENGSLQHHDCHQKKLNSHRDAHNDGSQL 640 
WD40-rpts      )   (__________________WD13__________________)    (______________________WD14___

Query      641 ETWGLVMVVAGLDGTIKTFHNYGLPIKL 668 
WD40-rpts      ___________________)        

14 WD40-repeats found in QUERY=CsaV3_6G041790 (Len=668):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-40       6.68  390.56  0.00034        2.5%      9.73
  WD 2:  Seg  7    82-117      4.98  320.54  0.00298       15.0%     35.45
  WD 3:  Seg 10   121-160      6.86  397.85  0.00027       22.5%     49.55
  WD 4:  Seg 14   161-200      9.14  492.41  1.4e-05       15.0%     46.68
  WD 5:  Seg 18   211-249      9.36  501.33  1.1e-05       35.0%     52.67
  WD 6:  Seg 22   253-297      4.06  282.42  0.00969       12.5%     39.90
  WD 7:  Seg 26   298-335      7.82  437.76  7.8e-05       27.5%     53.89
  WD 8:  Seg 30   338-377      7.55  426.48  0.00011       37.5%     54.63
  WD 9:  Seg 34   380-418      8.54  467.57  3.1e-05       27.5%     53.51
  WD10:  Seg 38   430-469      6.19  370.45  0.00063       15.0%     50.45
  WD11:  Seg 42   473-511      8.55  468.02  3.1e-05       25.0%     59.46
  WD12:  Seg 47   523-561      3.17  245.67  0.03003       10.0%     21.32
  WD13:  Seg 51   565-606      5.08  324.58  0.00263       20.0%     56.32
  WD14:  Seg 55   611-660      5.88  357.54  0.00095       25.0%     45.58

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-40     MLSSDGDADVFFDS--EDY------LP-LE-E-S-----------LVAEEADF-SKLGYEIWM
   WD 2   82-117    -RMELERLTECSGA--VSS------SD-YT-P-S-----------CN---VEE-NDLVVCHNE
   WD 3  121-160    -AEFDNEATSRLSS--VSD------SS-FRRP-Q-----------GEANVEAC-QDADVGKRK
   WD 4  161-200    ILTWWKSFKNKAAR--RRS------AD-FS-R-E-----------SELNSPKS-QSCRMKVYQ
   WD 5  211-249    -LYMRQQICAHKGL--IWT------MK-FS-P-D-----------GKYLASGG-EDGVVRIWR
   WD 6  253-297    -ANASSEFLADDGN--YNTKPKEGKSS-FS-S-K-----------PLRFATVV-IPEKVFQID
   WD 7  298-335    -ELPIQELHGHSSD--ILD------IA-WS-T-S-----------N-CLLSSS-KDKTVRLWQ
   WD 8  338-377    -SDQCLNVFHHKNY--VTC------VQ-FN-PMD-----------ENFFVSGS-IDGKIRIWG
   WD 9  380-418    -KQRVVDWADIRDV--ITA------VS-YR-P-D-----------GKGFAVGS-ITGTCRFYE
   WD10  430-469    -INVQGRKKASGKR--ITG------IQFFR-E-N-----------SQRVMITS-EDSKVRIFE
   WD11  473-511    -IIHKYKGLPKSGS--QMS------AS-FT-K-N-----------GKHIVSVG-EDSRVYMWN
   WD12  523-561    -AKSQQSCEHFFSD--GVS------VA-IP-W-S-----------GVGTEPNC-FSNNQALFS
   WD13  565-606    -NYQRAASWTRETDRFSLS------NW-FS-A-D-----------GLFRGSATWPEERLPLWD
   WD14  611-660    -EDENGSLQHHDCH--QKK------LN-SH-R-DAHNDGSQLETWGLVMVVAG-LDGTIKTFH

   WD40 Template    TGECLRTLSGHTSG--VTS------VS-FS-P-D-----------GKRLVSGS-EDGTIKVWD