Input parameters:

  Query = sp_Q6P2C0_WDR93_HUMAN (Len=686)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (sp_Q6P2C0_WDR93_HUMAN, Len=686):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSFPRGSQTQKIKHPIGTRKGPLEVPPPTEKDWPKDDEQDHVLVDPDEELDSLPQPYRMINKLVNLLFDQSWEIIEERNA 80  
WD40-rpts                                                                                      

Query       81 LREAESSQIQPTVYPPLGEIQLNKMPNCMAVSQDYVFIGGAKGFSIYNLYSAKQIYAWEKLKVDVTSIWATDLGNEILIA 160 
WD40-rpts                                                                                      

Query      161 PVDEMGIIRLFYFYKEGLYLVKAINEVDDTSKQTTCIKMEISQGGDFAAFLLQGAGDIWLDVYKLPKETWLKKLEHPQLT 240 
WD40-rpts                                                                                      

Query      241 SNPKKKVRQPQLNSLGPISADPLEMDANVSFKGDIKLSLPVYIMKIKPPKPVTGTTFKSPLEVFAKIKDCYGLGSGQNHF 320 
WD40-rpts                                                                                      

Query      321 IKDSQWEQQAEIFNASYKKYLDREWEEEPLSTATFYFLLPSCLFAMPPEVKGPSGMACVLGIHWTRSHNFFLYSLNRTLK 400 
WD40-rpts                                                                                (_____

Query      401 DKADPEGVWPCAAPIAVSQLSCSSSYLVLACEDGVLTLWDLAKGFPLGVAALPQGCFCQSIHFLKYFSVHKGQNMYPEGQ 480 
WD40-rpts      _______________WD 1____________________)                                        

Query      481 VKSQMKCVVLCTDASLHLVEASGTQGPTISVLVERPVKHLDKTICAVAPVPALPGMVLIFSKNGSVCLMDVAKREIICAF 560 
WD40-rpts                                                                                      

Query      561 APPGAFPLEVPWKPVFAVSPDHPCFLLRGDYSHETASTDDAGIQYSVFYFNFEACPLLENISKNCTIPQRDLDNMAFPQA 640 
WD40-rpts                                                                                      

Query      641 LPLEKRCERFLQKSYRKLEKNPEKEEEHWARLQRYSLSLQRENFKK 686 
WD40-rpts                                                    

1 WD40-repeats found in QUERY=sp_Q6P2C0_WDR93_HUMAN (Len=686):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 15   395-440      3.70  267.48  0.01537       22.5%     36.70

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  395-440    LNRTLKDKADPEGVWPCAAPIAVSQLSCSSSYLVLACEDGVLTLWD

   WD40 Template    TGECLRTLSGH------TSGVTSVSFSPDGKRLVSGSEDGTIKVWD