WDRR: WD40 Repeat Recognition
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| JobID: JTHJ81451074516 Submitted: 2015-12-26 04:15:16 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 288177547 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = sp_Q59P11_HSV2_CANAL (Len=595) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (sp_Q59P11_HSV2_CANAL, Len=595): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MVLAHSINTNPNTNTNTNNTSTTSSTTTIPNDSKILCINFNQDQGCFAISHEQGFLVYNTDPIELRVKRNFIVNSHTTSS 80
WD40-rpts (__________________________WD 1_________________________) (______
Query 81 RSNHSNGSNSNNNHRNNSTGSNGSVSSSGSNNETTLGYKSTHKSASGSGSGSGSGIGHISMLHRTNYLALIGGGENPKFP 160
WD40-rpts ______________WD 2____________________) (____________________WD 3_____________
Query 161 INKLIIWDDLKRKTSLSLEFDTPVLNVLLSRVRIIVVLIDQIIVYGFAAPPKKFQTFNTINNPLGIADLSVNSQQSNVHL 240
WD40-rpts _______) (_______________WD 4______________)
Query 241 YNNYSSNSAQAQVSGTTTTTHYDFSKRKSLSPTNSSNSSSTSLKENGTNLTTYPSPSSTTSASASVATITNTPEAATTAN 320
WD40-rpts (_________________WD 5_________________)
Query 321 PTTATTTATTTATTTTTTTSAKPLVNGIGSSYQTLAFPGRSMGQIQIVDVGNNHHSGTNIKPTINIIKAHKSNIRCLCLN 400
WD40-rpts (_______________________WD 6___
Query 401 RTGTLIASASITGTIIRIHSTRTTALLYEFRRGIDRAIITSMKFSHDDSKLAVLSDKHTLHVYNIDETQYPNDGGSGGTK 480
WD40-rpts ___________________) (__________________WD 7_________________)
Query 481 DGGGGGRGSKNRHHLLNGLLPYLPNYFQSTWSFCSVNTNKYHTSDLEDNSQQQQQQWVANGTGGGGVDEGVIGWSGNDSI 560
WD40-rpts (_____________________WD 8_________________
Query 561 IIIWKLKKIWEKYVIVETENHQYDLIRSSWKRLDS 595
WD40-rpts ____)
 8 WD40-repeats found in QUERY=sp_Q59P11_HSV2_CANAL (Len=595): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 3-59 4.04 281.45 0.00999 12.5% 36.82 WD 2: Seg 5 74-119 5.81 354.76 0.00103 17.5% 2.43 WD 3: Seg 6 123-168 4.43 297.84 0.00602 20.0% 34.06 WD 4: Seg 9 172-206 2.85 232.23 0.04522 20.0% 41.97 WD 5: Seg 18 264-303 6.49 382.82 0.00043 12.5% 25.55 WD 6: Seg 25 370-420 6.78 394.78 0.00030 22.5% 54.49 WD 7: Seg 29 424-464 6.70 391.53 0.00033 25.0% 56.71 WD 8: Seg 34 518-565 6.46 381.66 0.00045 12.5% 10.66Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 3-59 LA----------H--------SINTNPNTNTNTNNTSTTSSTT------TIPN--DSKILCINFNQDQGCFAISH--------EQG-FLVYN WD 2 74-119 NS----------H--------TTS------------------SRSNHSNGSNS--NNNHRNNSTGSNGSVSSSGSN-------NET-TLGYK WD 3 123-168 -K----------S--------ASG------------------S------GSGS--GSGIGHISMLHRTNYLALIGGGENPKFPINK-LIIWD WD 4 172-206 -R----------K--------TSL------------------S------LEFD--TP-VLNVLLSRVRIIVVL----------IDQ-IIVYG WD 5 264-303 FS----------K--------RKS------------------L------SPTN--SSNSSSTSLKENGTNLTTYPS-------PSS-TTSAS WD 6 370-420 VGNNHHSGTNIKP--------TIN------------------I------IKAH--KSNIRCLCLNRTGTLIASASI-------TGTIIRIHS WD 7 424-464 -T----------A--------LLY------------------E------FRRGIDRAIITSMKFSHDDSKLAVLSD-------KHT-LHVYN WD 8 518-565 TN----------KYHTSDLEDNSQ------------------Q------QQQQ--WVANGTGGGGVDEGVIGWSGN-------DSI-IIIWK WD40 Template TG----------E--------CLR------------------T------LSGH--TSGVTSVSFSPDGKRLVSGSE-------DGT-IKVWD |
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