Input parameters:

  Query = CmaCh05G007320 (Len=1161)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh05G007320, Len=1161):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGIFEPYRAIGYITNSVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIRALASYREYTFAAYGSDIAVF 80  
WD40-rpts                                                   (_________________WD 1_____________

Query       81 KRAHQVANWSSHNAKVNLLLLFGDHILSVDINGNMFMWHFKGNEDSPSPVGQVTLEGQFSPSCIMHPDTYLNKVMLGSLE 160 
WD40-rpts      ___)(_______________WD 2______________)         (_________________WD 3__________

Query      161 GSLELWNISSKKKLYEFKGWNSSVCCCVSSPALDVVAIGCADGKVHVHNIRYDQELFSFTHSTRGSVTALSFSSDGQPLL 240 
WD40-rpts      ______)   (_________________WD 4________________)(___________________WD 5_______

Query      241 ASGGSSGVISIWNLEKRRLQSVIREAHDSSIVSLHFLANEPVLMSSSTDNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI 320 
WD40-rpts      ____________)(___________________WD 6__________________)       (________________

Query      321 RFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRAKKLKLKEEEIKLKPVIAFDCAEIRERDWCNVVTCHVDTP 400 
WD40-rpts      _WD 7________________)                                                          

Query      401 QAYVWRLQNFVLGEHILKPCPENPTPIKACAISACGNFAFLGTEGGWIERFNLQSGASRGSYLDKKEGRNAAHIGEVVGL 480 
WD40-rpts                   (_________________WD 8________________)          (_________________

Query      481 ACDSTNTHVISAGVGGDIKVWNFKERDLKSRWEIGSSVVKIVYHRVNGLLAVVTDDLVIRLFDIVASRMVRKFEGHTDRI 560 
WD40-rpts      WD 9_________________)(__________________WD10_________________)   (_____________

Query      561 TDLSFSEDGKWLLTSSMDGSLRIWDVILARQIDALQVDASITAFSISPNMDILATTHVDQNGVYLWVNQLMFSGSSNVDT 640 
WD40-rpts      ____WD11________________)   (_________________WD12________________)             

Query      641 LASGKDIVNVKLPSVSTTEGMEFEGCDENPSKPPESKDLSGFHISSQQIPDLITLSLLPRSQWQSLVNLDIIKARNKPLE 720 
WD40-rpts                                                                                      

Query      721 PPKKPEKAPFFLPSLPSLSGEILFKPSESANTERAEKGVDNEQHKKSDITSSQFLQILESSSEVQNFSAFTDYIKGLSPS 800 
WD40-rpts                                                                                      

Query      801 TLDLELRMLQIIDDDDRQEPEKRPELISIELLLDYFIHEITCRNNFEFIQAFIRLFLKIHGETIRCQLTLQEKARKLLDI 880 
WD40-rpts                                                                                      

Query      881 QSSVWQGLDKIFQSSRYFSFSVLILPIYSIPNVIFTSYHSIRKPDGLNQNFESEMENYIGKRKPTIALSLFTALSASFSS 960 
WD40-rpts                                                                                      

Query      961 DKTKSARDFENGVVGLGIVAAMTDSHKFHEPFVSSKAVSPIVSSAKPAANFRGGLNLEKEQPEVVDELSESYTCVTSHFG 1040
WD40-rpts                                                                                      

Query     1041 NHMIEKRVFFNGELEMVNGRSSNMVTYGVFSTSPMSFGVAERGLFAAEFLSSCHLCCKHLHGLDIFMYRGEKAFCSVECR 1120
WD40-rpts                                                                                      

Query     1121 DKHIRGDDCREKCGSKVMKDYSALPCSVAAPPALASGVVAA 1161
WD40-rpts                                               

12 WD40-repeats found in QUERY=CmaCh05G007320 (Len=1161):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    46-84       2.98  237.85  0.03812        7.5%     28.64
  WD 2:  Seg  8    85-119      4.48  299.92  0.00564       17.5%     55.12
  WD 3:  Seg 12   129-167      5.67  348.77  0.00124       20.0%     55.56
  WD 4:  Seg 16   171-209      6.98  402.89  0.00023       25.0%     58.90
  WD 5:  Seg 20   210-253      6.34  376.42  0.00053       35.0%     56.13
  WD 6:  Seg 24   254-296      6.98  402.79  0.00023       27.5%     54.25
  WD 7:  Seg 28   304-342      7.61  429.07  0.00010       22.5%     52.03
  WD 8:  Seg 39   414-452      6.71  391.98  0.00032       17.5%     52.87
  WD 9:  Seg 44   463-502      8.53  467.16  3.1e-05       20.0%     45.63
  WD10:  Seg 47   503-543      5.16  327.73  0.00238       20.0%     57.18
  WD11:  Seg 51   547-585     10.03  528.86  4.6e-06       42.5%     58.23
  WD12:  Seg 55   589-627      4.55  302.76  0.00517       22.5%     55.23

Multiple sequence alignment of 12 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   46-84     -L---N---LVLVGPQLPKKIRALASYREYT-FAAYGSDIAV-FKRAH
   WD 2   85-119    ---------QVANWSSHNAKVNLLLLF--GD-HILSVDINGN-MFMWH
   WD 3  129-167    -P---V---GQVTLEGQFSPSCIMHPDTYLN-KVMLGSLEGS-LELWN
   WD 4  171-209    -K---K---KLYEFKGWNSSVCCCVSSPALD-VVAIGCADGK-VHVHN
   WD 5  210-253    IRYDQE---LFSFTHSTRGSVTALSFSSDGQPLLASGGSSGV-ISIWN
   WD 6  254-296    LE---KRRLQSVIREAHDSSIVSLHFLANEP-VLMSSSTDNS-IKMWI
   WD 7  304-342    -P---R---LLRFRSGHSAPPLCIRFYANGR-HILSAGQDRA-FRLFS
   WD 8  414-452    -E---H---ILKPCPENPTPIKACAISACGN-FAFLGTEGGW-IERFN
   WD 9  463-502    LD---K---KEGRNAAHIGEVVGLACDSTNT-HVISAGVGGD-IKVWN
   WD10  503-543    FK---E--RDLKSRWEIGSSVVKIVYHRVNG-LLAVVTDDLV-IRLFD
   WD11  547-585    -S---R---MVRKFEGHTDRITDLSFSEDGK-WLLTSSMDGS-LRIWD
   WD12  589-627    -A---R---QIDALQVDAS-ITAFSISPNMD-ILATTHVDQNGVYLWV

   WD40 Template    TG---E---CLRTLSGHTSGVTSVSFSPDGK-RLVSGSEDGT-IKVWD