Input parameters:

  Query = CsaV3_6G031630 (Len=357)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_6G031630, Len=357):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVPVASAMQGGSSGIGYGLKYQARCIADVKADTDHTSFITGTLSLKDENEVHLIRLSSSGSELICEGLFSHPNEIWDLAS 80  
WD40-rpts      (__________________WD 1_________________)                    (__________________

Query       81 CPFEQRIFSTVFSTGENFGAAIWQIPELYGELNSPQLERVTSLDEHASKINCVIWWPSGRHDKLISIDEENIFLWSLDCS 160 
WD40-rpts      _WD 2__________________)            (_________________WD 3_________________)    

Query      161 RKTAQVQSKESAGMLHYFSGGTWDPHDSNAIAATSESSVQFWDLRTMKKTDSIACSAYVRNVDYNPKKKHLLVTAEDETG 240 
WD40-rpts             (_______________WD 4_______________)(__________________WD 5______________

Query      241 ISIWDLRRPKVPIQQLPGHTHWTSAVRCNPEYDGLILSAGTDSAVNLWLASMSDDEPKSERKVDSSPRQCDPLLHSYSDY 320 
WD40-rpts      ____)(___________________WD 6___________________)                     (_________

Query      321 EDSVYGLAWSFREPWIFASLSYDGRVVVESVKPFLSR 357 
WD40-rpts      ________WD 7_________________)       

7 WD40-repeats found in QUERY=CsaV3_6G031630 (Len=357):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-41       3.39  254.51  0.02290       10.0%     32.85
  WD 2:  Seg  5    62-104      5.94  360.19  0.00087       17.5%     46.23
  WD 3:  Seg  9   117-156      6.59  386.92  0.00038       22.5%     56.01
  WD 4:  Seg 14   168-203      7.55  426.44  0.00011       10.0%     46.79
  WD 5:  Seg 17   204-245      6.84  397.11  0.00028       27.5%     49.62
  WD 6:  Seg 21   246-289      7.53  425.54  0.00011       22.5%     53.68
  WD 7:  Seg 25   311-350      5.77  352.85  0.00109       22.5%     54.01

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-41     MVP---VASAMQGGSSGIGYGLKYQA-R-CI-A----DVKADTDHTSFITG
   WD 2   62-104    -EL---ICEGLF-SHPNEIWDLASCP-F-EQ-RIFSTVFSTGENFGAAIWQ
   WD 3  117-156    -LE---RVTSLD-EHASKINCVIWWP-S-GRHD----KLISIDEENIFLWS
   WD 4  168-203    -------SKESA-GMLHYFSGGTWDP-H-DS-N----AIAATSESSVQFWD
   WD 5  204-245    LRT---MKKTDSIACSAYVRNVDYNP-K-KK-H---LLVTAEDETGISIWD
   WD 6  246-289    LRRPKVPIQQLP-GHTHWTSAVRCNP-EYDG-L----ILSAGTDSAVNLWL
   WD 7  311-350    -DP---LLHSYS-DYEDSVYGLAWSFRE-PW-I----FASLSYDGRVVVES

   WD40 Template    TGE---CLRTLS-GHTSGVTSVSFSP-D-GK-R----LVSGSEDGTIKVWD