JobID: JJIJB1659514261 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = CsaV3_2G026140 (Len=446)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_2G026140, Len=446):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MWKNIRDREAGKLRPNSFANRVKSDRTSSLQLSNHKDIVSPHRGSVNSLQVDLTEGRYLLSGASDASAAVFDIQRATHSE 80  
WD40-rpts                                      (_________________WD 1_________________)        

Query       81 GLIAKHQCIFAVDKQHEHGHKYAISSAIWYPVDTGLFVTGSFDHHINVWDTNTTQVVVNFKLPGKVYRTAMSSLATSHML 160 
WD40-rpts                 (_________________WD 2________________)(___________________WD 3______

Query      161 IAAGTEDVQVRLCDISSGAFSHTLSGHRDGVMSVEWSASSEWVLITGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPI 240 
WD40-rpts      _____________)   (_________________WD 4_________________)   (_______________WD 5

Query      241 SGWTANKLSTSKSLLASQGSNMKSRIPHKKLTNGNATKPSSTGKLPAKGSTRQRLHPGLLSGQDRAVSHYGAVTGLKVTG 320 
WD40-rpts      ______________)   (__________________WD 6_________________)(_________________WD 

Query      321 DGMYLLSAGSDSRLKLWDVESGCNTLVNFETIRLQTNKPLQLATSQDSSLVFAPCMATVKAFDMWTGKTSLTFSGHYEGV 400 
WD40-rpts      7________________)       (________________WD 8________________)   (_____________

Query      401 NCCWYNFPDQELYTGGNDRQILVWSPSQNSTELDWESTADKDNWSD 446 
WD40-rpts      ____WD 9________________)

9 WD40-repeats found in QUERY=CsaV3_2G026140 (Len=446):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    33-72       8.17  452.20  5.0e-05       27.5%     53.97
  WD 2:  Seg  8    92-130      7.58  427.76  0.00011       32.5%     45.00
  WD 3:  Seg 11   131-174      7.83  438.06  7.8e-05       20.0%     57.45
  WD 4:  Seg 15   178-217      9.08  489.60  1.6e-05       45.0%     57.88
  WD 5:  Seg 19   221-255      2.94  236.30  0.03996       15.0%     27.91
  WD 6:  Seg 22   259-299      6.03  363.57  0.00078       17.5%     30.19
  WD 7:  Seg 26   300-338      8.82  478.85  2.2e-05       27.5%     48.26
  WD 8:  Seg 29   346-383      6.10  366.68  0.00071       22.5%     50.45
  WD 9:  Seg 33   387-425      9.50  507.05  9.1e-06       32.5%     57.63

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   33-72     -SN----HKDIVSPHRGSVNSLQVDLT-E--GR-YLLSGASDASAAVFD
   WD 2   92-130    VDK------QHEHGHKYAISSAIWY-PVD--TG-LFVTGSFDHHINVWD
   WD 3  131-174    TNTTQVVVNFKLPGKVYRTAMSSLA-T-S--HM-LIAAGTEDVQVRLCD
   WD 4  178-217    -GA----FSHTLSGHRDGVMSVEWS-A-S--SEWVLITGGCDGAIRFWD
   WD 5  221-255    -AG----CFRVLDQSQSQL----GR-R-P--PI-SGWTANKLSTSKSLL
   WD 6  259-299    -GS----NMKSRIPHKKLTNGNATK-P-SSTGK-LPAKGSTRQRLHPGL
   WD 7  300-338    -LS----GQDRAVSHYGAVTGLKVT-G-D--GM-YLLSAGSDSRLKLWD
   WD 8  346-383    -LV----NFETIRLQTNKPLQLATS-Q-D--SS--LVFAPCMATVKAFD
   WD 9  387-425    -GK----TSLTFSGHYEGVNCCWYN-F-P--DQ-ELYTGGNDRQILVWS

   WD40 Template    TGE----CLRTLSGHTSGVTSVSFS-P-D--GK-RLVSGSEDGTIKVWD