Input parameters:

  Query = CmaCh02G011330 (Len=767)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh02G011330, Len=767):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGSVSEDEECPFFDAPDINVPSISEANFDGIEAGFDSRPRFNNWVDGSLGYDVWNRSPMSVHERRSKFLKWMGMGLDRAP 80  
WD40-rpts                                                (_______________________WD 1__________

Query       81 LANGNSLTVCLDWREGDGERWRDNSGAESSEFEDVFCSGRSSLSCWSNDDLEHSEMASKNSILYRDGGIHGECGRKIGDL 160 
WD40-rpts      _____________)                                                               (__

Query      161 KKSVRFALPEKLEEASNSSPSFQQMMEMEAERANIPLSTERRVNKRWLKKLRSAACIFDKHGKSRLVVDGDLSTGSRVPR 240 
WD40-rpts      _____________________WD 2______________________)     (_________________WD 3_____

Query      241 MKVRHCKKQLKELSAMYMGQDIQAHQGAVLTMKFSPSGRFLATGGDDGIVKLWQVIEDERLNESDIPEIDPSCIYFTVNH 320 
WD40-rpts      ___________)    (________________WD 4________________)   (_________________WD 5_

Query      321 LSELKPLRSEKEKIANSMALKKTSESACIIFPPKIFRILERPLHEFHGHTGDILDLSWSKNNYLLSSSIDKTVRLWRLGS 400 
WD40-rpts      _______________)                       (________________WD 6________________)(__

Query      401 NDCLRVFSHSNYVTCVHFNPMDENYFISGSIDGKIRIWGIPSSQVVDWIDIREIVTAVSYHPNGRRGVVGSINGTCRIFR 480 
WD40-rpts      ________________WD 7__________________)  (_________________WD 8________________)

Query      481 VIGDNNLELDAEICLSSKKKSPSKKITGFQYSANDSSRIMVSSADSRIRIVQGLHVIQKYKGPCNTGNQMSASFTSDGKH 560 
WD40-rpts                   (_________________WD 9________________)   (_________________WD10___

Query      561 IISASGDSNVYVWNCSYKNESILSPVKKIKSYEYFPSNGSIAVPWCGLISNTDDERRFSGTRRSSSDTFPLSSPAFFSLR 640 
WD40-rpts      _____________)(_________________WD11_________________)   (________________WD12__

Query      641 QELLESFPKGSATWPEEKLHASSLRMKPSMMHKSRYKFLKLSCQNTSSSHAWGLVIVTAGWDGRIRSFHNYGLPVHLSLY 720 
WD40-rpts      ______________)               (_________________WD13________________)           

Query      721 IFLYSRASLLKQLRRNKLLYGGTTSNQLVAKVAAGAWRTSYLAPFLL 767 
WD40-rpts                                                     

13 WD40-repeats found in QUERY=CmaCh02G011330 (Len=767):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    43-94       4.68  308.19  0.00437       10.0%     -9.93
  WD 2:  Seg  8   158-208      5.72  350.74  0.00117       12.5%     30.35
  WD 3:  Seg 11   214-252      6.70  391.57  0.00033       10.0%     32.02
  WD 4:  Seg 14   257-294      9.39  502.74  1.0e-05       30.0%     52.52
  WD 5:  Seg 18   298-336      4.63  305.87  0.00469       10.0%     25.85
  WD 6:  Seg 22   360-397      8.05  447.21  5.8e-05       30.0%     53.69
  WD 7:  Seg 26   398-439      7.71  432.97  9.1e-05       37.5%     54.81
  WD 8:  Seg 30   442-480      7.27  415.04  0.00016       30.0%     54.48
  WD 9:  Seg 34   494-532      6.73  392.59  0.00032       17.5%     48.44
  WD10:  Seg 37   536-574      8.86  480.74  2.1e-05       30.0%     58.25
  WD11:  Seg 41   575-614      7.70  432.57  9.2e-05        7.5%     43.58
  WD12:  Seg 45   618-655      5.78  353.30  0.00108       20.0%     28.48
  WD13:  Seg 48   671-709      5.64  347.69  0.00128       20.0%     34.24

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   43-94     NWV------DGS-----LGYDVWNRSPMSVHERRSKFLKWMGMGL-DRAPLANGNSLTVCLDWR
   WD 2  158-208    GDLKKSVRFALPEKLEEASNSSPSFQQM------------MEMEA-ERANIPLSTERRVNKRWL
   WD 3  214-252    -AA------CIF-----DKHGKSRLVVD------------GDLST-GSRVPRMKVRHCKKQLKE
   WD 4  257-294    --Y------MGQ-----DIQAHQGAVLT------------MKFSP-SGRFLATGGDDGIVKLWQ
   WD 5  298-336    -DE------RLN-----ESDIPEIDPSC------------IYFTV-NHLSELKPLRSEKEKIAN
   WD 6  360-397    -ER------PLH-----EFHGHTGDILD------------LSWSK-NN-YLLSSSIDKTVRLWR
   WD 7  398-439    LGS-----NDCL-----RVFSHSNYVTC------------VHFNPMDENYFISGSIDGKIRIWG
   WD 8  442-480    -SS------QVV-----DWIDIREIVTA------------VSYHP-NGRRGVVGSINGTCRIFR
   WD 9  494-532    C--------LSS-----KKKSPSKKITG------------FQYSANDSSRIMVSSADSRIRIVQ
   WD10  536-574    -VI------QKY-----KGPCNTGNQMS------------ASFTS-DGKHIISASGDSNVYVWN
   WD11  575-614    CSY------KNE-----SILSPVKKIKS------------YEYFP-SNGSIAVPWCGLISNTDD
   WD12  618-655    -FS------GTR-----RSSSDTFPLSS------------PAFFS-LRQELLESFPKGS-ATWP
   WD13  671-709    -MH------KSR-----YKFLKLSCQNT------------SSSHA-WGLVIVTAGWDGRIRSFH

   WD40 Template    TGE------CLR-----TLSGHTSGVTS------------VSFSP-DGKRLVSGSEDGTIKVWD