WDRR: WD40 Repeat Recognition
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| JobID: JDR1N1659505818 Submitted: 2022-08-03 13:50:18 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79746158 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh20G009040 (Len=884) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh20G009040, Len=884): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MATPPFKKNYRCVPFLQQFYEGGAFVVSSDASFIACACGDSIKIVDADTAAIRSTVEGGESEVFTALALSPNDEFLFSAG 80
WD40-rpts (_________________WD 1________________) (_________________WD 2_________
Query 81 HSRQIRVWDLSTMKCVRSWKGHDGPVMGMNCHLSGGLLATAGADRKVLVWDVDGGFCTHYFTGHKGVVSSILFHPDPNKQ 160
WD40-rpts ________) (_________________WD 3________________) (__________________WD 4___
Query 161 LLFSGSEDGSVRVWDLMSKKCIATLGHESTVTSFAISEDGWTLLSAGRDKVVNVWNLRNYSCKKTVLTYEVLEAVLVIKS 240
WD40-rpts ______________) (________________WD 5________________) (________________WD 6
Query 241 GSDFASCVGSSSQKRKETSVSSEIYFITVGERGVVRLWSSESAVCLFEQKSSDVSTKMDEQNMGFTAAVLLPSDRGLLCV 320
WD40-rpts ________________) (_________________WD 7_______
Query 321 TADQQFIFYSPVKTLGGEISLTTSKRLIGYNEEIVDMKFLGDDEQFLAVATNVEHIRVYDVASMSCSFILAGHTDIVLCL 400
WD40-rpts _________) (_________________WD 8_________________) (________________
Query 401 DSCVSSSGTTLIVTGSKDNNVRLWEAESKTCIGVGVGHMGAVGAVAFSKKRRDFFVSGSSDRTLKVWSFDGLSEDANKPI 480
WD40-rpts __WD 9__________________) (_________________WD10_________________)
Query 481 NLKAKAIVAAHDKDINSIAVAPNDSLVCSGSQDRTACVWRLPDLVSVVVLRGHKRGIWSVEFSPVDQCVVTASGDKTIKI 560
WD40-rpts (_________________WD11________________) (_________________WD12_______________
Query 561 WAISDGSCLKTFEGHMSSVLRASFLTRGTQLVSCGADGSVMLWTVKTEERIAVYDQHEDKIWALAVGKKTEMLATGGSDA 640
WD40-rpts _) (_________________WD13________________) (_________________WD14___________
Query 641 AVNLWYDSTALDKEEAFRKEEEGVLKGQELENAVSDADYAKAIQIAFDLRRPHRLFELFSELCSKNDYDNHVGKTLGALG 720
WD40-rpts _____) (_________________WD15_________________)
Query 721 KEDFRLLFEYLREWNTKPKLCHVAQFVLFRAFSILPPTEITEIKGIGELLEGLIPYSQRHFSRIDRLVRSSFLLDYTLTG 800
WD40-rpts
Query 801 MSVIQPETDTKISSDEPLVDTDMKTRTADVVLPNEYTDEQNETHDEPEDKALSKKRKSKKSKSSAKKKAKGVAYTEVAAV 880
WD40-rpts
Query 881 PLAV 884
WD40-rpts
 15 WD40-repeats found in QUERY=CmaCh20G009040 (Len=884): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 8-46 2.91 234.87 0.04174 15.0% 51.08 WD 2: Seg 5 50-89 6.51 383.65 0.00042 30.0% 58.87 WD 3: Seg 9 93-131 8.66 472.53 2.7e-05 27.5% 57.72 WD 4: Seg 13 135-175 8.61 470.24 2.9e-05 47.5% 57.28 WD 5: Seg 17 179-216 8.22 454.01 4.7e-05 42.5% 58.41 WD 6: Seg 21 220-257 4.79 312.58 0.00381 15.0% 43.76 WD 7: Seg 28 292-330 6.71 391.94 0.00032 12.5% 53.85 WD 8: Seg 32 341-380 5.76 352.40 0.00111 20.0% 50.58 WD 9: Seg 36 384-425 7.74 434.29 8.7e-05 30.0% 57.51 WD10: Seg 40 429-468 8.26 456.04 4.4e-05 40.0% 56.99 WD11: Seg 44 482-520 8.02 446.06 6.1e-05 25.0% 56.57 WD12: Seg 48 524-562 9.49 506.68 9.2e-06 40.0% 57.86 WD13: Seg 52 566-604 9.79 519.03 6.3e-06 42.5% 55.92 WD14: Seg 56 608-646 8.17 452.07 5.0e-05 15.0% 55.94 WD15: Seg 60 658-697 2.88 233.73 0.04321 7.5% 44.86Multiple sequence alignment of 15 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 8-46 KNYRCVPFLQQFYE-GGAFV---V-SSD--AS-FIACACGD-SIKIVD WD 2 50-89 -AAIRSTVEGGESEVFTALA---L-SPN--DE-FLFSAGHSRQIRVWD WD 3 93-131 -MKCVRSWKGHDGP-VMGMN---C-HLS--GG-LLATAGADRKVLVWD WD 4 135-175 -GFCTHYFTGHKGV-VSSIL---F-HPDPNKQ-LLFSGSEDGSVRVWD WD 5 179-216 -KKCIATL-GHEST-VTSFA---I-SED--GW-TLLSAGRDKVVNVWN WD 6 220-257 -YSCKKTVLTYEV--LEAVL---V-IKS--GS-DFASCVGSSSQKRKE WD 7 292-330 -SDVSTKMDEQNMG-FTAAV---L-LPS--DR-GLLCVTADQQFIFYS WD 8 341-380 -LTTSKRLIGYNEE-IVDMK---FLGDD--EQ-FLAVATNVEHIRVYD WD 9 384-425 -MSCSFILAGHTDI-VLCLDSCVS-SSG--TT-LIVTGSKDNNVRLWE WD10 429-468 -KTCIGVGVGHMGA-VGAVA---F-SKK--RRDFFVSGSSDRTLKVWS WD11 482-520 -LKAKAIVAAHDKD-INSIA---V-APN--DS-LVCSGSQDRTACVWR WD12 524-562 -LVSVVVLRGHKRG-IWSVE---F-SPV--DQ-CVVTASGDKTIKIWA WD13 566-604 -GSCLKTFEGHMSS-VLRAS---F-LTR--GT-QLVSCGADGSVMLWT WD14 608-646 -EERIAVYDQHEDK-IWALA---V-GKK--TE-MLATGGSDAAVNLWY WD15 658-697 RKEEEGVLKGQELE-NAVSD---A-DYA--KA-IQIAFDLRRPHRLFE WD40 Template TGECLRTLSGHTSG-VTSVS---F-SPD--GK-RLVSGSEDGTIKVWD |
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