Input parameters:

  Query = BGIBMGA000154 (Len=591)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (BGIBMGA000154, Len=591):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAEAMFSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLTSPPTCLQWTTVSQSVSNLKGNRSNSNASTNENESQCI 80  
WD40-rpts      (__________WD 1__________)                            (_________________WD 2____

Query       81 VLGTTNGKLLIYSISQAKIINVWVPAKHFSAKVTALDWSRKYGLYSCTKDSRVYEWNIEDGSVKQTYNISIENNTKQGSN 160 
WD40-rpts      ____________)(___________________WD 3___________________)           (___________

Query      161 INAIKIIPHNQHKKSRYLVTASYQLSLWRLHNKDVTLIKSLGYSTSQTAILSLVSFNDTYYIVEGSENERLLSFWDVTVT 240 
WD40-rpts      _______WD 4_________________)           (_______________WD 5_______________)   (

Query      241 DESTQNNNDEPTPNKRHKRKHSAVPVQPTPMYSFVLEDAPRAIDSVLREGDGVQLNIVAATRSGVVHYYQHTLNGSSTKP 320 
WD40-rpts      _________________WD 6________________)                                     (____

Query      321 IKPSLTIQTTTADAKPLPLQCCRLQQDGNINLGYLNDRGLVFEKITPDLKTKTQVLIRGDVKEKKKTKQNDNSLLRTEFH 400 
WD40-rpts      _____________WD 7________________)                                              

Query      401 SSEATYLDNTAVAPRKRTAPGANPSIEVPMEARLQNLALDVNSKSNVAVNENLTKLLIQGLHSKDKDIILTVLQKNDPRV 480 
WD40-rpts                                                                                      

Query      481 ARVTVSNLPPQYVFMLLEQLTEMSLKKTSQRSHLCQLLNLKGRLELTLTQRLLALGAEKQDEQTAVLDYNDSSDEDNDAD 560 
WD40-rpts                                                                                      

Query      561 MEPSQSESGASWDESDEQLSDDGDVEISDAE 591 
WD40-rpts                                     

7 WD40-repeats found in QUERY=BGIBMGA000154 (Len=591):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-26       5.10  325.50  0.00255       25.0%     37.08
  WD 2:  Seg  6    55-93       7.11  408.32  0.00020       15.0%     47.47
  WD 3:  Seg  9    94-137      5.72  351.13  0.00115       17.5%     48.11
  WD 4:  Seg 14   149-189      5.80  354.42  0.00104       10.0%     35.23
  WD 5:  Seg 18   201-236      3.76  270.12  0.01417       25.0%     37.44
  WD 6:  Seg 21   240-278      6.39  378.47  0.00049        5.0%     11.52
  WD 7:  Seg 27   316-354      2.91  234.83  0.04179       15.0%     22.92

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-26     -------------------MAEAMFSEDGKYYST---ITK-DGRLKIWD
   WD 2   55-93     -SQS-----VSNLKGNRSNSNASTNENESQCIVL---GTT-NGKLLIYS
   WD 3   94-137    ISQAKIINVWVPAKHFSAKVTALDWSRKY-GLYS---CTK-DSRVYEWN
   WD 4  149-189    IS-------IENNTKQGSNINAIKIIPHNQHKKSRYLVTA-SYQLSLWR
   WD 5  201-236    LG----------YSTSQTAILSLVSFNDTYYIVE---GSENERLLSFWD
   WD 6  240-278    -TDE-----STQNNNDEPTPNKRHKRKHSAVPVQ---PTP-MYSFVLED
   WD 7  316-354    -SST-----KPIKPSLTIQTTTADAKPLPLQCCR---LQQ-DGNINLGY

   WD40 Template    TGEC-----LRTLSGHTSGVTSVSFSPDGKRLVS---GSE-DGTIKVWD