Input parameters:

  Query = CsaV3_7G034890 (Len=512)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_7G034890, Len=512):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNGGNEVVAAPAGPPQPLDWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGGSRRDL 80  
WD40-rpts                                (_________________WD 1_________________)              

Query       81 ERMDNAIIRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQPANGALFLLSTNDKTIKYWKVQEKKVKKVSTMNVD 160 
WD40-rpts                          (____________________WD 2___________________)   (___________

Query      161 PSKPAGNGSNASSSNSSSSGQYLANGGSPDRYPSNDLSFPARGIQSLRLPVVTSHETNLVARCRRVYAHAHDYHINSISN 240 
WD40-rpts      ______WD 3________________)(_____________WD 4____________)   (________________WD

Query      241 NSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSH 320 
WD40-rpts       5________________)            (_________________WD 6________________)          

Query      321 SKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDSGPVAAFQVHEYLRPKLCDLYENDSIFDK 400 
WD40-rpts             (_________________WD 7_________________)                   (_____________

Query      401 FECCLSGDGLRVATGSYSNLFRVFGCISGSAEATTLEASKNPMRRQVQTPSRPTRSLSSSITRVVRRGAESPGIDANGNS 480 
WD40-rpts      ____WD 8________________)    (_________________WD 9________________)            

Query      481 FDFTTKLLHLAWHPTENSIACAAANSLYMYYA 512 
WD40-rpts                                      

9 WD40-repeats found in QUERY=CsaV3_7G034890 (Len=512):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    27-66       8.89  481.85  2.0e-05       12.5%     42.82
  WD 2:  Seg  7   101-145      5.19  328.89  0.00230       17.5%     48.50
  WD 3:  Seg 11   149-187      4.23  289.39  0.00781        5.0%     -0.25
  WD 4:  Seg 13   188-218      3.21  247.18  0.02867        5.0%     10.53
  WD 5:  Seg 14   222-259      5.97  361.12  0.00085       22.5%     51.76
  WD 6:  Seg 19   272-310      6.51  383.42  0.00042       25.0%     44.11
  WD 7:  Seg 23   328-367      6.83  396.59  0.00028       22.5%     40.50
  WD 8:  Seg 27   387-425      6.18  369.83  0.00065       20.0%     43.12
  WD 9:  Seg 30   430-468      5.37  336.29  0.00183       10.0%     43.75

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   27-66     GERTA---GE-EVQEVDIISAIEFDK--SG-DHLATGDRGGRVVLFE
   WD 2  101-145    SHEPEFDYLK-SLEIEEKINKIRWCQPANG-ALFLLSTNDKTIKYWK
   WD 3  149-187    -KKVK---KV-STMNVDPSKPAGNGS--NA-SSSNSSSSGQYLANGG
   WD 4  188-218    -------------SPDRYPSNDLSFP--AR-GIQSLRLPVVTSHETN
   WD 5  222-259    -RCRR---VY-AHAHDYHINSISNNS--DG-ETFISAD-DLRINLWN
   WD 6  272-310    --VKP---AN-MEDLTEVITSAEFHP--THCNMLAYSSSKGSIRLID
   WD 7  328-367    EAPGS---RSFFTEIIASISDIKFGK--DG-RYILSRD-YMTLKLWD
   WD 8  387-425    -KLCD---LY-ENDSIFDKFECCLSG--DG-LRVATGSYSNLFRVFG
   WD 9  430-468    -SAEA---TT-LEASKNPMRRQVQTP--SR-PTRSLSSSITRVVRRG

   WD40 Template    TGECL---RT-LSGHTSGVTSVSFSP--DG-KRLVSGSEDGTIKVWD