Input parameters:

  Query = CmaCh14G000580 (Len=1154)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh14G000580, Len=1154):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFAKRLLQKAIHHSQHAVLRGSLTPEDLDLRVTVHYGIPSTTSILAFDSIQRLLAIGTLDGRIKVIGGGGIEGLLMSPNQ 80  
WD40-rpts                                         (_____________WD 1_____________)  (__________

Query       81 LPYKYLEFLQNEGYLVSISNGNEIQVWNLDSRSIACCLQWQSNITAFSIVSGSHFMYVGDENGLLSVIKFDAEEEKLLQL 160 
WD40-rpts      _______WD 2________________)  (_________________WD 3________________)           

Query      161 PYLVSATSISDVAGFPFPDVQTSPVIGVLQHSSIGNSVLIAYASGLFLLWDVSRGQVLFVGGGKDLQMNDRLDESSSEVD 240 
WD40-rpts                 (_________________WD 4_________________)         (___________________

Query      241 DNLPIDALENSLAEKEISALCWASSNGSILAVGYIDGDILFWKTLITASGSGQQGSPVSKNVVRLQLSSSEKRLPVIVLH 320 
WD40-rpts      __________WD 5____________________________)                                     

Query      321 WSGNGRAPNDCEGRLFIYGGDEIGSEEVLTVLTIEWSPGMEVLRCAGRTEIKLHGSFADMILLPSPGAAGNGPKEELFVL 400 
WD40-rpts                                                              (___________________WD 6

Query      401 TNPGKLHFYDASMLSSIIDKTASKPLISPLEFPAMIPTSEPSMTTSKLIKLPNWGSSTKILSELALMKLSSTAIQARSAK 480 
WD40-rpts      ___________________)                                                        (___

Query      481 WPLTGGVPYQLPTMKDDKVERVYLAGYQDGSVRSWDATHPLFSFICHLDAELEGIKVAGSSAPILKLDFCCATTSLAVGN 560 
WD40-rpts      ______________WD 7_________________)          (___________________WD 8__________

Query      561 ECGLVRIYDLKGSADDKNLYFVTESRREVHSLPQGKGPHCRAVFSLLNSPIQALQFSKGGVKLGVGYGNGRIAVLDVSSS 640 
WD40-rpts      ________)              (________________________WD 9_______________________)    

Query      641 SVLFFTEGISNSCSPIITMIWKGNFAVTHGPIRSPKHSGAKSAVDCAEEPLFILTKDAKINVFDGTAGNMISPRPWHLKK 720 
WD40-rpts                            (__________________WD10__________________)                

Query      721 ESVAISMYVIESGISVSGSPDEKDNEESSQNPTTKSECNLGSGSAGSNLHESQHDSSAEETRHAEKFLDSYVLLCCEDSL 800 
WD40-rpts                                                                                      

Query      801 RLYSVKSIIQGNNKPTRKVKQSNCCWTTTFKIKERDVGLVLLFQSGVIEIRSLPDLELLKASSLQSILMWNFKANMDKIS 880 
WD40-rpts                                                  (_____________________WD11__________

Query      881 SSSEQGQIVLANGGEVAFLSLLSKENEFSIPDSLPSLHDEVVAAAADAAFSVSSYQKNNQPQFITVLLQLPSTGILSSIV 960 
WD40-rpts      ___________)                                                                    

Query      961 KGFKGGKMTPTVNFCTSRESYCAHLEEIFLKPPFPDSSSSALKNTEEVEELTIGSALNKSHNPHYCFLPNFLVTVNFLFE 1040
WD40-rpts                                                                                      

Query     1041 IDDIEIDDKPPPPASTSSKDVKEERRTDRQRLFGDGDDDWKPKTRTTEEILATYKFSGDASMAAAHARNKLLERQEKLEK 1120
WD40-rpts                                                                                      

Query     1121 LSKRTEDLRNGAEDFASLANELVRTMEKRKWWHI 1154
WD40-rpts                                        

11 WD40-repeats found in QUERY=CmaCh14G000580 (Len=1154):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    36-67       4.43  297.81  0.00602       25.0%     42.94
  WD 2:  Seg  5    70-108      5.71  350.46  0.00118       25.0%     56.51
  WD 3:  Seg  9   111-149      4.42  297.22  0.00613       17.5%     54.47
  WD 4:  Seg 14   172-211      3.74  269.33  0.01452       20.0%     40.76
  WD 5:  Seg 18   221-283      4.16  286.32  0.00859       25.0%     46.20
  WD 6:  Seg 26   377-420      3.09  242.30  0.03328        7.5%     39.51
  WD 7:  Seg 31   477-516      7.54  426.02  0.00011       15.0%     24.42
  WD 8:  Seg 34   527-569      6.02  363.17  0.00079       17.5%     47.89
  WD 9:  Seg 38   584-636      6.30  374.72  0.00055       30.0%     53.84
  WD10:  Seg 44   663-704      4.23  289.44  0.00780       12.5%     23.62
  WD11:  Seg 51   845-892      4.82  313.90  0.00366       22.5%     25.51

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   36-67     ------------------------------------YG-------IPSTTSILAFDS-IQRLLAIGTLDGRIKVIG
   WD 2   70-108    -G-----------------------IE-GL----LMSP-------NQLPYKYLEFLQ-NEGYLVSISNGNEIQVWN
   WD 3  111-149    -S-----------------------RS-IA----CCLQ-------WQSNITAFSIVS-GSHFMYVGDENGLLSVIK
   WD 4  172-211    -V-----------------------AG-FP----FPDV-------QTSPVIGVLQHSSIGNSVLIAYASGLFLLWD
   WD 5  221-283    GGGKDLQMNDRLDESSSEVDDNLPIDA-LE----NSLA-------EKEISALCWASS-NGSILAVGYIDGDILFWK
   WD 6  377-420    FA-----------------------DM-ILLPSPGAAG-------NGPKEELFVLTN-PGKLHFYDASMLSSIIDK
   WD 7  477-516    RS-----------------------AK-WP----LTGG-------VPYQLPTMKDDK-VERVYLAGYQDGSVRSWD
   WD 8  527-569    HL-----------------------DA-EL-EGIKVAG-------SSAPILKLDFCC-ATTSLAVGNECGLVRIYD
   WD 9  584-636    ES----------RREVHSLPQGKGPHC-RA----VFSL-------LNSPIQALQFSK-GGVKLGVGYGNGRIAVLD
   WD10  663-704    GN-----------------------FA-VT--HGPIRS-------PKHSGAKSAVDC-AEEPLFILTKDAKINVFD
   WD11  845-892    SG-----------------------VIEIR----SLPDLELLKASSLQSILMWNFKA-NMDKISSSSEQGQIVLAN

   WD40 Template    TG-----------------------EC-LR----TLSG-------HTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD