Input parameters:

  Query = WD40-61 (Len=323)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (WD40-61, Len=323):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKLAPLNTVQNAHDDSIWTAAWVPPTVDSGPLLLTGSLDETVRLWNPNGPDKLQTNTGHCLGVVSVTAHPSGRIAASASI 80  
WD40-rpts              (________________WD 1________________)   (_________________WD 2_________

Query       81 DSFIRVFDVATNNTIATLEAPPSEVWQLQFNPQGTTLAAAGGGSASVKLWDTAEWKLIATLEAPRPEGLKPSERSGSKKF 160 
WD40-rpts      _______)   (_________________WD 3_________________)                (____________

Query      161 ALSVAWSPDGRQIASGAMDGTISVFDVPRAKFMHHLEGHCMPVRSLVYSSAPLDSRVLFSASDDGHVHIYDAERKTLITS 240 
WD40-rpts      _____WD 4________________)   (__________________WD 5__________________)   (_____

Query      241 LSGHSSWVLSVDVSPDGAAIATGSSDKSVRLWDLKMRAATQILTSHTDQVWAVAFGPSLQTDVRSCLLASASDDKSVSFY 320 
WD40-rpts      ____________WD 6________________)   (____________________WD 7___________________

Query      321 KYS 323 
WD40-rpts      )  

7 WD40-repeats found in QUERY=WD40-61 (Len=323):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     9-46       7.14  409.77  0.00019       22.5%     47.89
  WD 2:  Seg  4    50-88       9.95  525.56  5.1e-06       40.0%     56.97
  WD 3:  Seg  8    92-131      8.71  474.46  2.5e-05       30.0%     57.51
  WD 4:  Seg 13   148-186      9.58  510.35  8.2e-06       42.5%     40.80
  WD 5:  Seg 16   190-231      8.59  469.32  2.9e-05       32.5%     53.73
  WD 6:  Seg 20   235-273     10.60  552.65  2.2e-06       42.5%     57.19
  WD 7:  Seg 24   277-321      7.80  436.66  8.1e-05       27.5%     57.29

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    9-46     -----VQNAHDDSIWTAAWVPPTVDSGP------LLLT-GSLDETVRLWN
   WD 2   50-88     PDKLQTNTGHCLGVVSVTAHP----SGR------IAAS-ASIDSFIRVFD
   WD 3   92-131    NNTIATLEAPPSEVWQLQFNP----QGT------TLAAAGGGSASVKLWD
   WD 4  148-186    GLKPSERSGSKKFALSVAWSP----DGR------QIAS-GAMDGTISVFD
   WD 5  190-231    AKFMHHLEGHCMPVRSLVYSS-APLDSR------VLFS-ASDDGHVHIYD
   WD 6  235-273    KTLITSLSGHSSWVLSVDVSP----DGA------AIAT-GSSDKSVRLWD
   WD 7  277-321    RAATQILTSHTDQVWAVAFGP----SLQTDVRSCLLAS-ASDDKSVSFYK

   WD40 Template    GECLRTLSGHTSGVTSVSFSP----DGK------RLVS-GSEDGTIKVWD