Input parameters:

  Query = CsaV3_6G044600 (Len=318)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_6G044600, Len=318):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLSEPSQTDSYKPYTLSQTLTSHKRCISSVKFSADGRLLGSSSADKTLRTYSCSNSTVTPVQEFQGHEQGVSDLAFSSDS 80  
WD40-rpts       (_______________________WD 1______________________)(___________________WD 2____

Query       81 RFLVSASDDKTLRLWDVSTGSLVKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKSGKCLKVLPAHSDPVTGVDF 160 
WD40-rpts      _______________)   (_________________WD 3________________)   (_________________W

Query      161 NRDGSLIVSSSYDGLCRIWDASTGHCVKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNFSTGKFLKTYTGHTNSK 240 
WD40-rpts      D 4________________)   (_________________WD 5_________________)   (_____________

Query      241 FCISSTFSVTNGRYIASGSEDNCVYLWELQTRQIVQKLEGHSDTVISVSCHPSENMIASGAVGNDKTVKIWTQKGSEE 318 
WD40-rpts      _____WD 6__________________)   (__________________WD 7_________________)      

7 WD40-repeats found in QUERY=CsaV3_6G044600 (Len=318):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     2-52       8.95  484.42  1.8e-05       37.5%     56.22
  WD 2:  Seg  5    53-96       9.93  524.73  5.3e-06       37.5%     57.52
  WD 3:  Seg  9   100-138     10.93  566.00  1.5e-06       45.0%     56.48
  WD 4:  Seg 13   142-180     10.88  564.03  1.6e-06       45.0%     58.47
  WD 5:  Seg 17   184-223      9.07  489.52  1.6e-05       37.5%     54.35
  WD 6:  Seg 21   227-268      8.73  475.45  2.4e-05       35.0%     56.63
  WD 7:  Seg 25   272-312      8.80  478.23  2.2e-05       35.0%     57.14

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    2-52     LS----EPSQTDSYKPYTLSQTL-TSHKRCISSVK---FSADGRLLGSSS--ADKTLRTYS
   WD 2   53-96     CSNSTVT-----------PVQEF-QGHEQGVSDLA---FSSDSRFLVSAS--DDKTLRLWD
   WD 3  100-138    -G----S-----------LVKTL-NGHTNYVFCVN---FNPQSNMIVSGS--FDETVRIWD
   WD 4  142-180    -G----K-----------CLKVL-PAHSDPVTGVD---FNRDGSLIVSSS--YDGLCRIWD
   WD 5  184-223    -G----H-----------CVKTLIDDENPPVSFVK---FSPNGKFILVGT--LDNTLRLWN
   WD 6  227-268    -G----K-----------FLKTY-TGHTNSKFCISSTFSVTNGRYIASGS--EDNCVYLWE
   WD 7  272-312    -R----Q-----------IVQKL-EGHSDTVISVS---CHPSENMIASGAVGNDKTVKIWT

   WD40 Template    TG----E-----------CLRTL-SGHTSGVTSVS---FSPDGKRLVSGS--EDGTIKVWD