WDRR: WD40 Repeat Recognition
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| JobID: J719T1659513947 Submitted: 2022-08-03 16:05:47 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79738258 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_1G006540 (Len=1209) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_1G006540, Len=1209): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MARIFEYFVVCGIGPEIRTLDGNKGFHGFGYLYLPSLLDQYPPSNNSRCPPPPPQLPTCVLPAGVEFFSSGYDSSDASTF 80
WD40-rpts
Query 81 PRSYPIVLTEGDGSKIYVSCIAFRDPVSEDIAEAYRIPPNSYADKCICIVSRSPSFRVLKDALEELFALCFSSSGSSKPL 160
WD40-rpts
Query 161 WDIIAHIVSNVPLSTPGKDRILFGIENCLLSVQAPSKDGLPYADISFQPLTQCLDLENVIKLFTAVLLERRILLRSNKYS 240
WD40-rpts
Query 241 LLTLVSEAICHLIYPFRWQHVYIPLLFFSGVDYIDAPTPYMMGLHSGVDTSYLAMDGVVVVDLEYNCITTTEDIPPIPEP 320
WD40-rpts
Query 321 ELGSLRSELMKLLYPNVVSIDQMRSDLRSASEQYPRGSSKPWGENQDLQLRLIFLKFFASLLSGYRNFVESNATDVFNTQ 400
WD40-rpts
Query 401 AFLKKRSRSTNQPEDPMITQFLESQGFLDYLERCIGSDESNNNILDKLQDAIGRGQNPLSILPPLVEPEIITISDPDLGT 480
WD40-rpts
Query 481 SGSGAKYTYDRFPSNIRTEEQEEKRKQILAAASGAFEYSGKHNPNSPSISTGKDLKAESLSPMERQAERDRMVLDIKVKL 560
WD40-rpts
Query 561 QGLWLRLLKLGATDDPLSSFEYGTILALIESDAEGIGGSGFVECISEHINTGWLCQLTDEQFIAVKELLKTAISRATSRN 640
WD40-rpts
Query 641 DILTIRDALEVSGEMFKKDPNNVPDYIQRHLISLSIWEELRFWEGYFDYLMERSSNKSANYASQVSAQLIVMASHMAGLG 720
WD40-rpts (____________________WD 1____________
Query 721 LPDTDAWYMIETIAEKNSIGYKQLIKLRGFLSHIQQLRISYWGLSSVKSQSISAHALPSPRPKDGSDQNQQPAEASVVGR 800
WD40-rpts _______) (____________________WD 2___________________)
Query 801 SWVQSMFSRDTSARINLGRSGRWSSDATSESGTPPRQDLSSAGQKKVQSNIRVLRGHSGAVTALHCVTKREVWDLVGDRE 880
WD40-rpts (____________________WD 3___________________) (___________________WD 4_
Query 881 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTGPVRAINSDRVKVVSGSDDQSVIVWDKQTTQLLEELKGHDAQVSCV 960
WD40-rpts _________________) (________________WD 5_______________) (________________
Query 961 RMLSGERVLTAAHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDTVANIWDIRAGRQMHKLLGHTKWI 1040
WD40-rpts WD 6________________) (_________________WD 7________________) (_____________
Query 1041 RSIRMVGDTIVTGSDDWTARLWSVSRGTCDAVLACHAGPILAVEYSALDKGIITGSTDGLLRFWENEDGGIRCVKNVTIH 1120
WD40-rpts ___WD 8_______________) (_________________WD 9________________) (_________
Query 1121 SAAILSISAGEHWLGIGAADNSMSLFHRPQERLGGFPNTGAKMAGWQLYRTPQKTAAMVRCAASDLERKRICTGGRNGLL 1200
WD40-rpts _______WD10_______________) (_________________WD11_____________
Query 1201 RLWEATINI 1209
WD40-rpts ___)
 11 WD40-repeats found in QUERY=CsaV3_1G006540 (Len=1209): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 13 684-728 4.86 315.39 0.00349 10.0% 29.21 WD 2: Seg 15 732-776 5.56 344.42 0.00142 12.5% 39.36 WD 3: Seg 21 808-852 5.93 359.68 0.00088 17.5% 33.58 WD 4: Seg 25 856-898 6.74 392.99 0.00031 25.0% 44.63 WD 5: Seg 29 904-940 8.07 447.89 5.7e-05 40.0% 49.07 WD 6: Seg 33 944-981 8.42 462.62 3.6e-05 35.0% 55.45 WD 7: Seg 37 985-1023 9.09 489.98 1.5e-05 22.5% 56.92 WD 8: Seg 41 1027-1063 7.88 440.01 7.3e-05 32.5% 50.03 WD 9: Seg 45 1067-1105 9.89 523.23 5.5e-06 30.0% 56.08 WD10: Seg 49 1111-1147 6.50 383.32 0.00042 17.5% 49.22 WD11: Seg 52 1166-1204 7.23 413.38 0.00017 20.0% 48.33Multiple sequence alignment of 11 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 684-728 -----------E-----GYFDYLMERSSNKSANYA------SQVSAQLIVMASHMAGLGLPDTDAWY WD 2 732-776 -TIAEKN---SI-----GYKQLIKLRGFLSHIQQLRISYWGL-------------SSVKSQSISAHA WD 3 808-852 SRDTSAR---INLGRSGRWSSDATSESGTPPRQDL------S-------------SAGQKKVQSNIR WD 4 856-898 GHSGAVTALHCV-----TKREVWDLVGDREDAGFF------I-------------SGSTDCLVKIWD WD 5 904-940 -SELRAT---LK-----GHTGPVRA--INSDRVKV------V-------------SGSDDQSVIVWD WD 6 944-981 -TQLLEE---LK-----GHDAQVSCVRML-SGERV------L-------------TAAHDGTVKMWD WD 7 985-1023 -DTCVAT---VG-----RCSSAVLCMEYDDSTGIL------A-------------AGGRDTVANIWD WD 8 1027-1063 -GRQMHK---LL-----GHTKWIRSIRMVGD--TI------V-------------TGSDDWTARLWS WD 9 1067-1105 -GTCDAV---LA-----CHAGPILAVEYSALDKGI------I-------------TGSTDGLLRFWE WD10 1111-1147 -IRCVKN---VT-----IHSAAI--LSISAGEHWL------G-------------IGAADNSMSLFH WD11 1166-1204 -WQLYRT---PQ-----KTAAMVRCAASDLERKRI------C-------------TGGRNGLLRLWE WD40 Template TGECLRT---LS-----GHTSGVTSVSFSPDGKRL------V-------------SGSEDGTIKVWD |
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