WDRR: WD40 Repeat Recognition
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| JobID: J34ME1529440250 Submitted: 2018-06-20 04:30:50 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 209811539 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = PNW79711.1 (Len=2032) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (PNW79711.1, Len=2032): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MGCGASIDAGHTRASAEATKPNQQQRSLDPPSNDGELVAAALGRLRECHLLQLQDTADILDKIVVVSRGAKVNKHNCSSL 80
WD40-rpts
Query 81 CTLSVLSGVALCRVLDSVASSSEALQELQPRFEAINKALEGVLKVLEQYSSSKWLAHVALQQAKVAKQAGTGRSRPGPFT 160
WD40-rpts
Query 161 QEFKAARDTLSKALEAVAVESTCLAAMDLIKTRLSHHLQGEDLRTDMEDCVAAVVMAAGGETLSQALQRMREEGEAGAAL 240
WD40-rpts
Query 241 LAEAARVFNVAPGLLAASLNSLAAEVLAPAAAELAGALEGALDVFDSLLEGLDTLPMGVGAALKLVKVVLRRAQGVQVNK 320
WD40-rpts
Query 321 RACTQLKSLVEGVGDTLARYVQRASEQQRRDLEGPLAGLTAHLREADSLLERFGAGSWLRHFLYSRLATEELAEVHAKIY 400
WD40-rpts
Query 401 GGMAHLNLDIALQQHCSGGGCKVQPAAAAAYEAQDDLRAAEAAVIDAAGGEANGVTSAVEAVKVLQGRGQLGVAEVARCF 480
WD40-rpts
Query 481 GVAEAVMCAELEGIKDMLQDVARVVQGTDAKVDRLQVTLEQIQAENENFQVPTNLAIFLRQFWKENVGLLKSVQWHELKV 560
WD40-rpts
Query 561 LLRAMFDEDVQFCGDMLRGLLAQLGTPPVAGAASTAVSVSGSAAAAATAAAASDAVDPGDVFLDVALLPLLDVNHDMVIT 640
WD40-rpts
Query 641 LQELYVFQVQCQMMAKRRQPPPPLETMGGMMRVVAEAKQPALPSPPSQPAARGGQQQQQQQPGAPPPHAATACDDAGGGA 720
WD40-rpts
Query 721 AAAASDQQLQVPALTEEQLASLSPSTAAVVKEGMSMMKSYALADLLQDYLDGSRQWMYDKVMAWLRAQQQQQQLEAAAAG 800
WD40-rpts
Query 801 QLQAAAAAAAGQPAASTPAGSQGQHQHVFLLLAEAGMGKSVFTASLVHFKLPLLQDCIVAHHFFRVGQRRAQGRAMIISL 880
WD40-rpts
Query 881 AAQLAVSLPGMSAALQASLEEQQAAAANEGGTPLLQGDWLTRLPLSQAFEWLLEAPLNRVHQQRLLQEQEAGGAAPSSLQ 960
WD40-rpts
Query 961 PTTVLLVLDALDEADSDGAGWTPVVQMLAARFRQLPAWVHLFSTGRPEVQELFDEGWRQEWINPQDMQNSNDLQVLLERS 1040
WD40-rpts
Query 1041 LALERYVAEADRAAATQVLLRKSEGRFIYCKYIFKSLQARLLDGAAAAAAAVWTLPELEELPYGLTGVYTHELDRVAGAL 1120
WD40-rpts
Query 1121 QRDGKAGLLDLLRARLLPVLAVMQEPLTTTELVLLMGGQQGVGEGSSSSSSNMESDVELLLSLISTLYPRRTGAADGLAR 1200
WD40-rpts
Query 1201 VAPYHKSVRDFLMEHRAAAVQPWHVDEAAAHALVAQALAWACQATRGRGARDQLCQAAKSGTSSSSLSIGQLPPPLLADN 1280
WD40-rpts
Query 1281 TQPAPPPYALQHMFNHVVKGLAAGSAGLMDDVMQDYALIAAIFNCGAGRNAVRALRPVKSSPHLSPFGKDSVRWMMQCAG 1360
WD40-rpts
Query 1361 ALSGEDNALPIMEALKAPTGTAVFQEARAWFVQQFSDVCPWVPSISLGSLGGSPQWNAACDFVCVGHKNAVTSVCFSPDG 1440
WD40-rpts (______________________WD 1_______
Query 1441 RSLVSGSEDKTLRVWDAASGECKATLSGHSSAVTSVCFSPDGRSLVSGSEDKTLRVWDPASGECKAMLSGHSSAVISVCF 1520
WD40-rpts _______________) (_________________WD 2________________) (_________________W
Query 1521 SPDGRSLVSGSDDKTLRVWDAASGECKATLSGHSSAVISVCFSPDGRSLVSGSDDSTLYVWDAASGKCKAKLGGHSGNVV 1600
WD40-rpts D 3________________) (_________________WD 4________________) (______________
Query 1601 SMCFSPDGRSVVSGSYDGSFSVRDAASGECKATLWMDHRRDRINVVSSVCFSPDGRSVVSGIQDKMLRVWDAASGECKAT 1680
WD40-rpts ___WD 5________________) (___________________WD 6___________________) (_____
Query 1681 LSGHRSAVTSVCFSPDGRSLVSGSEDKTLHVWDPASGEYMANTKFWGRSRAVSSVCFSPDGRSLVSGSHEETTLRVWDAA 1760
WD40-rpts ____________WD 7________________)(____________________WD 8___________________)
Query 1761 SGESKAKLYIRKNSINSSEVSSVCFSPDGRSVVSGSLDSTLRVWSAVFWDGKPPLIISGHSSAVTSVCFSPDGRSLVSGS 1840
WD40-rpts (_________________WD 9________________) (_________________WD10________
Query 1841 EDKTLRVWDPASGECKATLSGHSSAVTSVCFSPDGRSLVSGSEDKTLRVWDPASGDCKATLSGHSSAVTSVCFSPDGRSL 1920
WD40-rpts ________) (_________________WD11________________) (_________________WD12____
Query 1921 VSGSDDKTLRVWDAASGDCKATLSGHSSAVTSVCFSPDGRSLVSGSFDCTLRVWDVASRECKAKLSGHSSAVTSVCFSPD 2000
WD40-rpts ____________) (_________________WD13________________) (_________________WD14
Query 2001 GCSLVSGSHDETLRMWHARFMLPVSTRLHSVC 2032
WD40-rpts ________________)
 14 WD40-repeats found in QUERY=PNW79711.1 (Len=2032): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 12 1407-1456 10.00 527.77 4.8e-06 60.0% 52.45 WD 2: Seg 16 1460-1498 11.92 607.04 4.1e-07 72.5% 58.06 WD 3: Seg 20 1502-1540 11.62 594.78 6.0e-07 65.0% 57.14 WD 4: Seg 24 1544-1582 11.72 598.93 5.3e-07 67.5% 56.81 WD 5: Seg 28 1586-1624 10.66 554.98 2.1e-06 50.0% 57.22 WD 6: Seg 32 1628-1671 8.99 486.22 1.7e-05 50.0% 57.62 WD 7: Seg 36 1675-1713 11.70 598.05 5.4e-07 72.5% 57.70 WD 8: Seg 40 1714-1758 8.16 451.72 5.1e-05 47.5% 57.80 WD 9: Seg 44 1767-1805 9.65 513.35 7.5e-06 47.5% 47.16 WD10: Seg 47 1811-1849 11.04 570.74 1.3e-06 62.5% 55.36 WD11: Seg 51 1853-1891 11.70 597.98 5.4e-07 72.5% 57.27 WD12: Seg 55 1895-1933 11.60 593.72 6.2e-07 67.5% 55.47 WD13: Seg 59 1937-1975 11.49 589.22 7.1e-07 67.5% 57.53 WD14: Seg 63 1979-2017 10.80 560.73 1.7e-06 60.0% 57.02Multiple sequence alignment of 14 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1407-1456 LGSLGGSPQWNAACDFVC-----VGHKNAVTSVCFSPDGRSLVSGS-EDKTLRVWD WD 2 1460-1498 -GE----------CKATL-----SGHSSAVTSVCFSPDGRSLVSGS-EDKTLRVWD WD 3 1502-1540 -GE----------CKAML-----SGHSSAVISVCFSPDGRSLVSGS-DDKTLRVWD WD 4 1544-1582 -GE----------CKATL-----SGHSSAVISVCFSPDGRSLVSGS-DDSTLYVWD WD 5 1586-1624 -GK----------CKAKL-----GGHSGNVVSMCFSPDGRSVVSGS-YDGSFSVRD WD 6 1628-1671 -GE----------CKATLWMDHRRDRINVVSSVCFSPDGRSVVSGI-QDKMLRVWD WD 7 1675-1713 -GE----------CKATL-----SGHRSAVTSVCFSPDGRSLVSGS-EDKTLHVWD WD 8 1714-1758 PAS------GEYMANTKF-----WGRSRAVSSVCFSPDGRSLVSGSHEETTLRVWD WD 9 1767-1805 KLY-----------IRKN-----SINSSEVSSVCFSPDGRSVVSGS-LDSTLRVWS WD10 1811-1849 -GK----------PPLII-----SGHSSAVTSVCFSPDGRSLVSGS-EDKTLRVWD WD11 1853-1891 -GE----------CKATL-----SGHSSAVTSVCFSPDGRSLVSGS-EDKTLRVWD WD12 1895-1933 -GD----------CKATL-----SGHSSAVTSVCFSPDGRSLVSGS-DDKTLRVWD WD13 1937-1975 -GD----------CKATL-----SGHSSAVTSVCFSPDGRSLVSGS-FDCTLRVWD WD14 1979-2017 -RE----------CKAKL-----SGHSSAVTSVCFSPDGCSLVSGS-HDETLRMWH WD40 Template TGE----------CLRTL-----SGHTSGVTSVSFSPDGKRLVSGS-EDGTIKVWD |
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