WDRR: WD40 Repeat Recognition
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| JobID: J2CPM1659518697 Submitted: 2022-08-03 17:24:57 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79730392 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_5G029230 (Len=844) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_5G029230, Len=844): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MTTKRAYKLQEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLWAIGKPNAILSLTGHTSGIDSVSFDSSEVLVAAGAAS 80
WD40-rpts (__________________WD 1_________________)(__________________WD 2____________
Query 81 GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVS 160
WD40-rpts ______) (_________________WD 3________________) (_________________WD 4______
Query 161 GGEDNTVKLWDLTAGKLLHDFKCHEGQVQCIDFHPHEFLLATGSADKTVKFWDLETFELIGSAGPETSGVRCLTFNPDGR 240
WD40-rpts __________) (_________________WD 5________________) (________________WD 6___
Query 241 TLLCGLHESLKVFSWEPIRCHDGVEVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDITRTEPYAVNNANRLNGRPEPKS 320
WD40-rpts _____________) (________________WD 7________________)(______________________WD
Query 321 SSHLQNENNTKTSFGGLSVSQTSDALLKETKTLGRLSVSQNSDVAKDPKSLSSTGNGPSTPQKINLNAGSKTNLVSSAAV 400
WD40-rpts 8_____________________)(__________________WD 9_________________)(______________
Query 401 PSAVVPKRNSVKATSTFNNPIFNKSDVIPVIVPRTSSRHEQDDSRKEFDVAGRAVPVSRTNSRQEQDDSRKEFDVAARVM 480
WD40-rpts ___WD10_________________)
Query 481 PLSRSNSRHEQDDSRKECDVAGRAAPAPLLSKTTDNRRFPNSRDEVDNPTISVLSESRGLKANDMSTIADNRNSLHGIGS 560
WD40-rpts
Query 561 IQGVSAPQKIVKEERYIGSGKNETETKDTTANYKHEDESRGHKISRDASFPEATKGGRLRSHVDWEKRERPNFSRLTYNA 640
WD40-rpts
Query 641 SPGRAAALENIPLNNGRGYRPSPEKETVSPASDEDTIANVLQQHDQFVNSMQSRSAKLQAVYRHWERHDIKGAVSAMEKM 720
WD40-rpts
Query 721 ADHAVAADVISIMTNRIEVVTLDICTCILPVLSGLLESDLDRYLDISMEMLVKLVRTFGSVIYSTLSATSSVGVNIEAEQ 800
WD40-rpts
Query 801 RLERCNLCFIELEKVKRCLPALIRKRGSVAKSAQELNLALQEFQ 844
WD40-rpts
 10 WD40-repeats found in QUERY=CsaV3_5G029230 (Len=844): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 5-45 7.47 423.30 0.00012 25.0% 55.21 WD 2: Seg 5 46-87 9.93 524.81 5.2e-06 45.0% 56.12 WD 3: Seg 9 91-129 10.39 543.66 2.9e-06 45.0% 56.88 WD 4: Seg 13 133-171 11.03 570.16 1.3e-06 50.0% 56.28 WD 5: Seg 17 175-213 9.34 500.59 1.1e-05 35.0% 55.07 WD 6: Seg 21 217-254 7.18 411.19 0.00018 32.5% 56.58 WD 7: Seg 25 258-295 5.35 335.47 0.00187 17.5% 53.40 WD 8: Seg 29 296-344 4.59 304.17 0.00495 12.5% 21.21 WD 9: Seg 32 345-385 4.83 314.34 0.00361 17.5% 40.44 WD10: Seg 36 386-425 6.19 370.41 0.00063 10.0% 35.52Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 5-45 RA--YK---------LQEFVAHSSAVNCLKIGRKSSRVL-VTGGEDFKVNLWA WD 2 46-87 IGKPNA---------ILSLTGHTSGIDSVSFD-SSEVLV-AAGAASGTIKLWD WD 3 91-129 -A--KI---------VRTLTGHRSNCISVDFH-PFGEFF-ASGSLDTNLKIWD WD 4 133-171 -K--GC---------IHTYKGHTRGVNAIRFT-PDGRWV-VSGGEDNTVKLWD WD 5 175-213 -G--KL---------LHDFKCHEGQVQCIDFH-PHEFLL-ATGSADKTVKFWD WD 6 217-254 -F--EL---------IGSAGPETSGVRCLTFN-PDGRTL-LCGL-HESLKVFS WD 7 258-295 -I--RC---------HDGVEVGWSRLSDLNVH--EGKLL-GCSYNQSCVGVWV WD 8 296-344 VD--ITRTEPYAVNNANRLNGRPEPKSSSHLQ-NENNTK-TSFGGLSVSQTSD WD 9 345-385 AL--LK---------ETKTLGRLSVSQNSDVA-KDPKSLSSTGNGPSTPQKIN WD10 386-425 LN--AG---------SKTNLVSSAAVPSAVVP-KRNSVK-ATSTFNNPIFNKS WD40 Template TG--EC---------LRTLSGHTSGVTSVSFS-PDGKRL-VSGSEDGTIKVWD |
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