WDRR: WD40 Repeat Recognition
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JobID: IZYJV1352451964    Submitted: 2012-11-09 17:06:04

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Job status:  [Done] Total run time: 386799560 seconds.    [Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = PF3D7_1231900 (Len=1086)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (PF3D7_1231900, Len=1086):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPDTKYENLLQYDLKIYRNDILEKEKKKNDLRNILFFPSLFWFNGQFCPPIPVVKYYSNLCAFKVKDYVTCSIHKFSVII 80  
WD40-rpts                                                                                      

Query       81 RRIVKNEIVHVNMFNEKKVLSCVFYINIDYILKLSNIINKYMLLDFVPLTTCLVEKENELIKYTYKKNISLSYKLFCYNE 160 
WD40-rpts                                                                                      

Query      161 KNEIHLFDVEKNKSLLSFSEKNQITCLTFNFLYISKKNSLYNKLFNDIYDENKIKIVDIDNIDKQIVTKNMYCFELSQDK 240 
WD40-rpts                                                                                      

Query      241 INNTYNTCKDNEKHLKIFKNLFYLLIYGDDQGNVYFFVPQKNVKIKKKLRNEKINLIETNVKEYFKVQNINDLYHNIKNN 320 
WD40-rpts                                                                                      

Query      321 HYIFVAYKECIQVVQFYFFEIYFVINFVHEKLYSMTTKFNNLGQNYLSFSTKNYVKIYNINEMKEINCINNNIIQKRDEN 400 
WD40-rpts                                                                                      

Query      401 NEKENIILHEIDKSSENQEVEEDQEEEKKKKKHCLIACPVQKLHEQTGEKNINENYKEIICDDMEYKKYENNENMEEQNK 480 
WD40-rpts                                                                                      

Query      481 DDSLIYTSNKNHKNDNNKNISDKKDLKYYTCIHFDSADNIYISSDKGIINVYNLNEKRIIKSFHINCKIIFYLFFFILNN 560 
WD40-rpts                                                                                      

Query      561 KEYIYIYDSEKFYCLYVIDEKKNVYKIFTLSLWIYHIICFDNNIIFSLGNENIYNLQLKKYNNNKILNSIYSNNINICIF 640 
WD40-rpts                                                                                      

Query      641 LINHPQLPIIAFINKKSVFGFFYLTKVQKKRPNQEKNIIIPNIRENQHIISICWFGKPKNIIKNKDILFDYDNVNDIIEK 720 
WD40-rpts                                                                                      

Query      721 TNNSNDVQANSHCVYESVSLNNNHIDIIENNVTKENKKKKRKKMNMMKMEGLKSDMNNNIYPNTFDTYLVILNEKGLYLY 800 
WD40-rpts                                                                                      

Query      801 NIITNEILKLNNDLLNNLYEFKGKKYMASTIFNNEIYVFILYEKKLLFFNHNMEFDSYDINLNEKINKMYLKDNILFLLS 880 
WD40-rpts                                                                                      

Query      881 NSNIYFIFIEYLLINLLNKKFNVLKNCIHDIKDDTNGVIVNSNLSNNINSDIIHADNHIEKLEYQEKENEKKYVSQGHEL 960 
WD40-rpts                                                                                      

Query      961 YITKLKFPQNFKILLFDFYYMTNGELYIAIFSKKKKIMIYKINLYHEDYNNRKQRNEENTILEIEAQLIAQFINFYIFEH 1040
WD40-rpts                                                                                      

Query     1041 INKVGSILCMKFFYNSEKKKIYLVFGGLEQFLFSWNFLKYPIIQKK 1086
WD40-rpts                                                    



No WD40-repeats found in QUERY=PF3D7_1231900 (Len=1086)!

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